GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004769-TA|BGIBMGA004769-PA|undefined
         (137 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.3  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    20   8.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 60   KRSINDYTKLGIG 72
            KR+IN YT  G+G
Sbjct: 1222 KRNINTYTLDGVG 1234



 Score = 20.2 bits (40), Expect = 8.3
 Identities = 13/44 (29%), Positives = 17/44 (38%)

Query: 56  CHHDKRSINDYTKLGIGVDCDALSMYSEKTSIPASASAVSIRVN 99
           C    +  ND T     VDC  L +      IP  A+ V +  N
Sbjct: 761 CPAGCKCYNDRTWNTNAVDCSGLGVEEIPRRIPMDATEVYLDGN 804


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 84  KTSIPASASAVSIRVNRG 101
           +  IPA+ + +S+  NRG
Sbjct: 87  RNGIPATLTYISLDTNRG 104


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.127    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,506
Number of Sequences: 429
Number of extensions: 1357
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 137
length of database: 140,377
effective HSP length: 52
effective length of query: 85
effective length of database: 118,069
effective search space: 10035865
effective search space used: 10035865
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)