GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004767-TA|BGIBMGA004767-PA|IPR013151|Immunoglobulin,
IPR013162|CD80-like, immunoglobulin C2-set,
IPR007110|Immunoglobulin-like, IPR003598|Immunoglobulin subtype 2
         (185 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    29   0.027
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    29   0.027
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.59 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   5.5  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            21   9.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 29.1 bits (62), Expect = 0.027
 Identities = 35/138 (25%), Positives = 54/138 (39%), Gaps = 11/138 (7%)

Query: 18  GDTLELICETYGGDPRPSVTWYLENTVIDDSFE-QRPDGVTVNTLTFPSVGRQHL----N 72
           G  + L C    G+P P VTW L+   +  +        VTV+      V   H+     
Sbjct: 436 GPAVSLKCSA-AGNPTPQVTWALDGFALPTNGRFMIGQYVTVHGDVISHVNISHVMVEDG 494

Query: 73  ARLVCQASNTNLAPPETKLLILDINLRPLSVQILNKRPELSADRTYELECKTTGSRPEAQ 132
               C A N   A   T    L++   P  ++++ K   + A  T  L+C   G  P  +
Sbjct: 495 GEYSCMAENR--AGKVTHAARLNVYGLPY-IRLIPKVTAV-AGETLRLKCPVAG-YPIEE 549

Query: 133 VTWWKVLREQRNDQRPNV 150
           + W +  RE  +D R  V
Sbjct: 550 IKWERANRELPDDLRQKV 567



 Score = 25.0 bits (52), Expect = 0.45
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)

Query: 17  EGDTLELICETYGGDPRPSVTW 38
           +GDT  L CE +G  P  +VTW
Sbjct: 821 KGDTATLHCEVHGDTP-VTVTW 841



 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 13  EPYNEGDTLELICETYGGDPRPSVTW 38
           E  +EG     +C    GDP  +++W
Sbjct: 620 EGLSEGMRTRTVCGVAAGDPPLTISW 645


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 29.1 bits (62), Expect = 0.027
 Identities = 35/138 (25%), Positives = 54/138 (39%), Gaps = 11/138 (7%)

Query: 18  GDTLELICETYGGDPRPSVTWYLENTVIDDSFE-QRPDGVTVNTLTFPSVGRQHL----N 72
           G  + L C    G+P P VTW L+   +  +        VTV+      V   H+     
Sbjct: 436 GPAVSLKCSA-AGNPTPQVTWALDGFALPTNGRFMIGQYVTVHGDVISHVNISHVMVEDG 494

Query: 73  ARLVCQASNTNLAPPETKLLILDINLRPLSVQILNKRPELSADRTYELECKTTGSRPEAQ 132
               C A N   A   T    L++   P  ++++ K   + A  T  L+C   G  P  +
Sbjct: 495 GEYSCMAENR--AGKVTHAARLNVYGLPY-IRLIPKVTAV-AGETLRLKCPVAG-YPIEE 549

Query: 133 VTWWKVLREQRNDQRPNV 150
           + W +  RE  +D R  V
Sbjct: 550 IKWERANRELPDDLRQKV 567



 Score = 25.0 bits (52), Expect = 0.45
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)

Query: 17  EGDTLELICETYGGDPRPSVTW 38
           +GDT  L CE +G  P  +VTW
Sbjct: 817 KGDTATLHCEVHGDTP-VTVTW 837


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.59
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 30   GDPRPSVTWYLENTVI--DDSFEQRPDG 55
            G P P VTW +   V+   D   Q P+G
Sbjct: 1302 GVPAPEVTWKVRGAVLQSSDRLRQLPEG 1329



 Score = 23.8 bits (49), Expect = 1.0
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 13  EPYNEGDTLELICETYGGDPRPSVTWYLENTVIDDSFE-QRPDGVTVN 59
           E    G ++ L C    G+P P +TW L+   + ++   Q    VTVN
Sbjct: 403 ETLQPGPSMFLKCVA-SGNPTPEITWELDGKRLSNTERLQVGQYVTVN 449


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 36  VTWYLENTVIDDSFEQRPDGVTVNTLTFPS 65
           V W L+N    DSF +    VT  T+T P+
Sbjct: 112 VDW-LKNMWRPDSFFKNAKSVTFQTMTIPN 140


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 18  GDTLELICETYGGDPRPSV 36
           GD +E+ C+  G  P P V
Sbjct: 325 GDNVEIKCDVTGTPPPPLV 343


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 30 GDPRPSVTW 38
          G PRP +TW
Sbjct: 48 GFPRPEITW 56


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.134    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,080
Number of Sequences: 429
Number of extensions: 2859
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 185
length of database: 140,377
effective HSP length: 54
effective length of query: 131
effective length of database: 117,211
effective search space: 15354641
effective search space used: 15354641
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)