GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004766-TA|BGIBMGA004766-PA|IPR008775|Phytanoyl-CoA
dioxygenase
         (265 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    31   0.014
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.7  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    22   4.9  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   4.9  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   6.5  

>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 30.7 bits (66), Expect = 0.014
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 5/95 (5%)

Query: 48  MESSWVGSDHNDRKHDKNFT-VKGIHNLQFHHAVFSKFIFNDNLLDALEDVMNTKNIIFH 106
           +E SW   D+  R   K +  VK +H +   H      +  +N     E  + TK  I+H
Sbjct: 81  VEQSWY--DYKLRWEPKEYGGVKMLH-VPSDHIWRPDIVLYNNADGNFEVTLATKATIYH 137

Query: 107 HTKAHYKPPEKGAAYPMHQDYHYFPYEKDSMVASF 141
                +KPP    +     D  YFP+++ + V  F
Sbjct: 138 QGLVEWKPPAIYKS-SCEIDVEYFPFDEQTCVLKF 171


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 35  EYNNLFYRKNQEKMESSWVGSDHN 58
           EY  + Y+K    M   +VG D N
Sbjct: 505 EYTPVVYKKTPHAMGLDYVGEDDN 528


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
          protein.
          Length = 129

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 13 EENGYIVLKNVLSEEDLCSITIEYNNLFYRKN 44
          +E G IV++     +   S+ I+Y    Y KN
Sbjct: 37 QERGSIVIQGTKEGKSRPSLDIDYKQRVYDKN 68


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/24 (29%), Positives = 15/24 (62%)

Query: 87  NDNLLDALEDVMNTKNIIFHHTKA 110
           N+ + +   ++ N K+++FHH  A
Sbjct: 102 NNAVEEKRPELTNRKSVVFHHDNA 125


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 87  NDNLLDALEDVMNTKNIIFHHTKA 110
           N+ + +   ++ N K ++FHH  A
Sbjct: 224 NNAVEEKRPELTNRKGVVFHHDNA 247


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.137    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,326
Number of Sequences: 429
Number of extensions: 4179
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 5
length of query: 265
length of database: 140,377
effective HSP length: 57
effective length of query: 208
effective length of database: 115,924
effective search space: 24112192
effective search space used: 24112192
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)