GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004765-TA|BGIBMGA004765-PA|IPR003439|ABC transporter
related, IPR002197|Helix-turn-helix, Fis-type, IPR003395|SMC protein,
N-terminal, IPR010935|SMCs flexible hinge
         (1127 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    26   1.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               26   1.5  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    25   4.6  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 884 RQLESENPWIPSERQYFGAPGGLYDFEGRQAHVAASRLHQLAERRDRLARGLNA 937
           RQ ++E  WIP  RQ+     G   F  R+   AA       +R +++AR +N+
Sbjct: 415 RQTQTE-VWIPKWRQFLYCLAGDESFRKRRQREAAGNCR---KRGEKIARHINS 464


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 403 QQASEASTRITSAMMDKKHAEERLKTLEKEFTTSSKQYDADQESIRRQQAQVEQLERELA 462
           QQA +     T    D +   E +K+ +KEF  SS   D    SI ++ +     + ++A
Sbjct: 76  QQAGKPKEE-TDDKDDDESDNENIKS-QKEFPNSSSSDDERPNSIHQRASFSLNTDGDIA 133

Query: 463 GLAHDESRVTSL 474
           GL   + +V  L
Sbjct: 134 GLRKKKHKVNPL 145


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 10/39 (25%), Positives = 22/39 (56%)

Query: 260 IKLKKETIKNNEKEMKELDKQVVDLNKKLDEESGNVLKD 298
           +++KK  +K N  ++K   + + D NK+L E+    + +
Sbjct: 174 LRIKKHAVKFNPAKVKLRFENLFDGNKELGEQMNRFINE 212


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.131    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,226
Number of Sequences: 429
Number of extensions: 10087
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 45
Number of HSP's gapped (non-prelim): 3
length of query: 1127
length of database: 140,377
effective HSP length: 65
effective length of query: 1062
effective length of database: 112,492
effective search space: 119466504
effective search space used: 119466504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)