GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004764-TA|BGIBMGA004764-PA|undefined
         (102 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   0.56 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   4.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   4.0  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 23.4 bits (48), Expect = 0.56
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 52  ELEAIKKVAQILIMLGDQVIPAIIGE--PPKHLQ 83
           + E  KK+ QILI +    I  I G+  P KH Q
Sbjct: 255 QAEEYKKIQQILIRMNKLCIQTIGGQIKPRKHEQ 288


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 10/17 (58%), Positives = 10/17 (58%)

Query: 37  RLQAQEPRLPLPSLQEL 53
           RLQ   P L L  LQEL
Sbjct: 226 RLQENSPLLDLRQLQEL 242


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 44   RLPLPSLQELEAIKKVAQILIMLGDQVIPAI 74
            RLP P   + E   KV   + + G+Q  P I
Sbjct: 1104 RLPYPWTMDNERYVKVDMYMNLEGEQKDPVI 1134


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.134    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,814
Number of Sequences: 429
Number of extensions: 1008
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 102
length of database: 140,377
effective HSP length: 49
effective length of query: 53
effective length of database: 119,356
effective search space:  6325868
effective search space used:  6325868
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)
S2: 38 (19.4 bits)