GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004761-TA|BGIBMGA004761-PA|undefined
         (68 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   1.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                19   5.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   7.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   7.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    18   9.3  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 7/22 (31%), Positives = 10/22 (45%)

Query: 27  RVKLQRKCVLCIASVAFSGPGH 48
           R+K+   C  CI+      P H
Sbjct: 316 RIKILGDCYYCISGAPIERPDH 337


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 19.0 bits (37), Expect = 5.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 45  GPGHIPTRQVQ 55
           GPG +PT  +Q
Sbjct: 401 GPGGVPTSVIQ 411


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 18.6 bits (36), Expect = 7.0
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 21   WKEIAKRVKLQRKCVL 36
            W  ++  VK+QR+ V+
Sbjct: 1544 WTLVSNSVKMQRRFVV 1559


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 18.6 bits (36), Expect = 7.0
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 21   WKEIAKRVKLQRKCVL 36
            W  ++  VK+QR+ V+
Sbjct: 1540 WTLVSNSVKMQRRFVV 1555


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 18.2 bits (35), Expect = 9.3
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query: 46  PGHIPTRQVQHRG 58
           PGH     ++HRG
Sbjct: 201 PGHAAFISMRHRG 213


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.132    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,251
Number of Sequences: 429
Number of extensions: 508
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 68
length of database: 140,377
effective HSP length: 45
effective length of query: 23
effective length of database: 121,072
effective search space:  2784656
effective search space used:  2784656
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.4 bits)
S2: 35 (18.2 bits)