GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004760-TA|BGIBMGA004760-PA|undefined
         (196 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    27   0.16 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   0.36 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   0.83 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   5.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   5.9  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   7.8  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 26.6 bits (56), Expect = 0.16
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 107 ELSKRMTRLEAARKPLSPTASTSPE 131
           EL KR+  LE   KP+S + ST+ E
Sbjct: 338 ELQKRLPWLELQEKPISDSTSTTTE 362


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 3   RTPTTSGAATKPVTPSPSAAPIAVQDAAR-TFIRRP-ERSRRSLDNME 48
           R P  +  ++ PV+P PS  P+ +    R T I  P +R +  L++ME
Sbjct: 431 RDPILTPPSSNPVSPVPSPDPLDLAIPVRETLILPPRKRCKMILESME 478


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.2 bits (50), Expect = 0.83
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 122 LSPTASTSPEYEDHILERLGQVEINLQTR 150
           LSP AS + E  + I E L   ++ +QTR
Sbjct: 440 LSPEASKATEAVEFIAEHLRNEDLYIQTR 468


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/40 (22%), Positives = 16/40 (40%)

Query: 108 LSKRMTRLEAARKPLSPTASTSPEYEDHILERLGQVEINL 147
           ++K   R   A KP  P   T P    H+ +    + + +
Sbjct: 237 MAKSFVRKVHATKPPKPQTKTKPTSPYHVSDHKAAITVGV 276


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/46 (21%), Positives = 23/46 (50%)

Query: 23  PIAVQDAARTFIRRPERSRRSLDNMETYKKQQDNYAVMLSDKLLQE 68
           PI+      +FI  P ++  SL +  T   +Q  ++ + + K+ ++
Sbjct: 657 PISCHTTPDSFIEAPNKTLPSLPSTLTKNSKQGLFSKLFAKKVKKD 702


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 31  RTFIRRPERSRRSLDNMETYKKQQDNYAVMLSDKLLQELMKTFEDIPS 78
           + + R  ER ++S  N  +Y+K ++       D+  +   +    IPS
Sbjct: 270 KRYSRSREREQKSYKNENSYRKYRETSKERSRDRRERGRSREHRIIPS 317


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.128    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,247
Number of Sequences: 429
Number of extensions: 2230
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 196
length of database: 140,377
effective HSP length: 55
effective length of query: 141
effective length of database: 116,782
effective search space: 16466262
effective search space used: 16466262
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 42 (21.0 bits)