GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004758-TA|BGIBMGA004758-PA|IPR010625|CHCH
         (147 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   4.0  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   4.0  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 29  SRVSLPDPEPTPGLI 43
           +R  LPDP+ TP LI
Sbjct: 200 ARGMLPDPKKTPFLI 214


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 29  SRVSLPDPEPTPGLI 43
           +R  LPDP+ TP LI
Sbjct: 200 ARGMLPDPKKTPFLI 214


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.136    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,215
Number of Sequences: 429
Number of extensions: 1388
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 147
length of database: 140,377
effective HSP length: 52
effective length of query: 95
effective length of database: 118,069
effective search space: 11216555
effective search space used: 11216555
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)