GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004751-TA|BGIBMGA004751-PA|IPR008957|Fibronectin, type
III-like fold, IPR007110|Immunoglobulin-like
         (363 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    28   0.11 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    28   0.11 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   5.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   5.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 28.3 bits (60), Expect = 0.11
 Identities = 46/179 (25%), Positives = 64/179 (35%), Gaps = 22/179 (12%)

Query: 44  PLRFYWTYNGTKDVLPVPASNVTVMGSSST--VIHGLH--DDEDEDLGWLACWASNDIGN 99
           P+   W   G  ++ P     VTV    +   VI  L     E  D G   C ASN  G 
Sbjct: 836 PVTVTWLKGGKIELNPSTNYRVTVKREVTPDGVIAQLQISSAEASDSGAYFCQASNLYGR 895

Query: 100 QREPCLFRIMPAALPEPPSNCEVTNEVLRCDAGHDGGLSQQFLLEALEEVRPRQPTVDEN 159
            ++  L +++    P+PP++ E         A     +  Q   +   EV        E 
Sbjct: 896 DQQ--LVQLLVQEPPQPPNSLETAMV-----ASRSINVKWQHKSQDTTEVTKYILQYKEG 948

Query: 160 EISTMNDQGISGRGLSEAVYRYRNDKPQFSLDALSPG-RYTFLIYAETPRGRSPRPAAL 217
           +      Q  +G  L  A            +D L P  RYT  + AE P GRS   A L
Sbjct: 949 DAGIWQQQEFTGPPLPYAAL----------IDELKPATRYTIRVIAEGPAGRSVPSAEL 997


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 28.3 bits (60), Expect = 0.11
 Identities = 46/179 (25%), Positives = 64/179 (35%), Gaps = 22/179 (12%)

Query: 44  PLRFYWTYNGTKDVLPVPASNVTVMGSSST--VIHGLH--DDEDEDLGWLACWASNDIGN 99
           P+   W   G  ++ P     VTV    +   VI  L     E  D G   C ASN  G 
Sbjct: 832 PVTVTWLKGGKIELNPSTNYRVTVKREVTPDGVIAQLQISSAEASDSGAYFCQASNLYGR 891

Query: 100 QREPCLFRIMPAALPEPPSNCEVTNEVLRCDAGHDGGLSQQFLLEALEEVRPRQPTVDEN 159
            ++  L +++    P+PP++ E         A     +  Q   +   EV        E 
Sbjct: 892 DQQ--LVQLLVQEPPQPPNSLETAMV-----ASRSINVKWQHKSQDTTEVTKYILQYKEG 944

Query: 160 EISTMNDQGISGRGLSEAVYRYRNDKPQFSLDALSPG-RYTFLIYAETPRGRSPRPAAL 217
           +      Q  +G  L  A            +D L P  RYT  + AE P GRS   A L
Sbjct: 945 DAGIWQQQEFTGPPLPYAAL----------IDELKPATRYTIRVIAEGPAGRSVPSAEL 993


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 48  YWTYNGTKDVLPVPASNVTVMGS 70
           Y TYNGT   +  P     V+GS
Sbjct: 363 YLTYNGTVHDVEFPGXYTMVIGS 385


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 12/31 (38%), Positives = 14/31 (45%)

Query: 215 AALRSVSIRTVEDLDRPGSLQTMTPGPPSPP 245
           A+L  V   T E L    +    TP PPS P
Sbjct: 28  ASLTLVKAETPEHLAGTSTTAAATPTPPSVP 58


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.132    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,965
Number of Sequences: 429
Number of extensions: 4410
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 363
length of database: 140,377
effective HSP length: 59
effective length of query: 304
effective length of database: 115,066
effective search space: 34980064
effective search space used: 34980064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)