GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004750-TA|BGIBMGA004750-PA|IPR013151|Immunoglobulin,
IPR013162|CD80-like, immunoglobulin C2-set,
IPR007110|Immunoglobulin-like, IPR003599|Immunoglobulin subtype
         (281 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              37   2e-04
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    33   0.003
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    33   0.003
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.25 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 9/101 (8%)

Query: 45  AHLAVEKVVRYDEGIYRCRIDYVDSPTRNYRVNLTVIVPPEPPRLYDSEGREILGNFAGP 104
           A L +E V + D+G+Y+C +   D  +      L +    EPP++  +   E L      
Sbjct: 353 AVLRIESVKKEDKGMYQCFVRN-DQESAQATAELKLGGRFEPPQIRQAFAEETL------ 405

Query: 105 FREGQNLLLSCQAAGGKPPPDVSWYQGPDRLAFTREGSVCQ 145
            + G ++ L C  A G P P+++W     RL+ T    V Q
Sbjct: 406 -QPGPSMFLKC-VASGNPTPEITWELDGKRLSNTERLQVGQ 444



 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 106 REGQNLLLSCQAAGGKPPPDVSWYQGPDRL 135
           R G+  +L C+A G K P  + W     RL
Sbjct: 789 RRGEPAVLQCEAQGEK-PIGILWNMNNKRL 817


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 33.1 bits (72), Expect = 0.003
 Identities = 54/222 (24%), Positives = 85/222 (38%), Gaps = 19/222 (8%)

Query: 47  LAVEKVVRYDEGIYRCRIDYVDSPTRNYRVNLTVIVPPEPPRLYDSEGREILGNFAGPFR 106
           LA+E V   D GIYRC          +  + L V  P     L+      +L    G   
Sbjct: 295 LALEAVTLEDNGIYRCSASNPGGEA-SAEIRLIVTAP-----LHVEVTPPLLSVHLGGNA 348

Query: 107 EGQNLLLSCQAAGGKPPPDVSWYQGPDRLAFTREGSVCQLHIPTLSREMSGAKFQCRVEP 166
           E +  + +   AG   P  ++WY+   +L  T   S   L +  ++RE  G  +QC V  
Sbjct: 349 EFRCEVSTHPQAG---PHFITWYKDGRQLPGTGRQSEL-LRLNGINREDRGM-YQCIVRR 403

Query: 167 PLLEPQFRDVTIKLFLKPQFVRVTGSGAT-RAGQNRSFVCTTRGSKPAPNIDWFINSRLV 225
              +       ++L   P  +  +    T + G   S  C+  G+ P P + W ++   +
Sbjct: 404 SEGDTAQASAELQLGNAPPMLLYSFIEQTLQPGPAVSLKCSAAGN-PTPQVTWALDGFAL 462

Query: 226 DSTMT-----EVEVDGDVTKSILTWHVRREDSGRQLVCRVSN 262
            +         V V GDV   +   HV  ED G +  C   N
Sbjct: 463 PTNGRFMIGQYVTVHGDVISHVNISHVMVEDGG-EYSCMAEN 503



 Score = 30.3 bits (65), Expect = 0.020
 Identities = 39/174 (22%), Positives = 62/174 (35%), Gaps = 24/174 (13%)

Query: 56  DEGIYRCRIDYVDSPTRNYRVNLTVIVPPEPPRLYDSEGREILGNFAGPFREGQNLLLSC 115
           D G+Y C        +     ++ VIVPP        EG            EG      C
Sbjct: 583 DAGVYTCSARNKQGHSARRSGDVAVIVPPIIEPFTFQEG----------LSEGMRTRTVC 632

Query: 116 QAAGGKPPPDVSWYQG-------PDRLAFTREGSV----CQLHIPTLSREMSGAKFQCRV 164
             A G PP  +SW +        P  LA      +      L I  L+ E SG  + C  
Sbjct: 633 GVAAGDPPLTISWLKDGQSPFPLPPNLASANISQLDPYSSLLSITNLAAEHSG-DYTCVA 691

Query: 165 EPPLLEPQFRDVTIKLFLKPQFVRVTGSGATRAGQNRSFVCTTRGSKPAPNIDW 218
             P  E ++    +++ + P+++      +    ++ +  C  +G  P P I W
Sbjct: 692 ANPAAEVRY-TAKLQVKVPPRWIVEPTDVSVERNKHVALHCQAQG-VPTPTIVW 743



 Score = 29.5 bits (63), Expect = 0.035
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 19   PSVHWATAGEFGARTHFVLNESDPSSAHLAVEKVVRYDEGIYRCRIDYVDSPTRNYRVNL 78
            P+  W        RT    N     S  L +  +   D G Y C+++      + +   L
Sbjct: 1341 PTREWYKGQGEQIRTDSTRNIQILPSGELMLSNLQSQDGGDYTCQVENAQGNDKLH-YTL 1399

Query: 79   TVIVPPEPPRLY 90
            TV VPP  P LY
Sbjct: 1400 TVQVPPSAPVLY 1411


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 33.1 bits (72), Expect = 0.003
 Identities = 54/222 (24%), Positives = 85/222 (38%), Gaps = 19/222 (8%)

Query: 47  LAVEKVVRYDEGIYRCRIDYVDSPTRNYRVNLTVIVPPEPPRLYDSEGREILGNFAGPFR 106
           LA+E V   D GIYRC          +  + L V  P     L+      +L    G   
Sbjct: 295 LALEAVTLEDNGIYRCSASNPGGEA-SAEIRLIVTAP-----LHVEVTPPLLSVHLGGNA 348

Query: 107 EGQNLLLSCQAAGGKPPPDVSWYQGPDRLAFTREGSVCQLHIPTLSREMSGAKFQCRVEP 166
           E +  + +   AG   P  ++WY+   +L  T   S   L +  ++RE  G  +QC V  
Sbjct: 349 EFRCEVSTHPQAG---PHFITWYKDGRQLPGTGRQSEL-LRLNGINREDRGM-YQCIVRR 403

Query: 167 PLLEPQFRDVTIKLFLKPQFVRVTGSGAT-RAGQNRSFVCTTRGSKPAPNIDWFINSRLV 225
              +       ++L   P  +  +    T + G   S  C+  G+ P P + W ++   +
Sbjct: 404 SEGDTAQASAELQLGNAPPMLLYSFIEQTLQPGPAVSLKCSAAGN-PTPQVTWALDGFAL 462

Query: 226 DSTMT-----EVEVDGDVTKSILTWHVRREDSGRQLVCRVSN 262
            +         V V GDV   +   HV  ED G +  C   N
Sbjct: 463 PTNGRFMIGQYVTVHGDVISHVNISHVMVEDGG-EYSCMAEN 503



 Score = 29.5 bits (63), Expect = 0.035
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 19   PSVHWATAGEFGARTHFVLNESDPSSAHLAVEKVVRYDEGIYRCRIDYVDSPTRNYRVNL 78
            P+  W        RT    N     S  L +  +   D G Y C+++      + +   L
Sbjct: 1337 PTREWYKGQGEQIRTDSTRNIQILPSGELMLSNLQSQDGGDYTCQVENAQGNDKLH-YTL 1395

Query: 79   TVIVPPEPPRLY 90
            TV VPP  P LY
Sbjct: 1396 TVQVPPSAPVLY 1407


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 37/163 (22%), Positives = 66/163 (40%), Gaps = 13/163 (7%)

Query: 106 REGQNLLLSCQAAGGKPPPDVSWYQGPDRLAFTREGSVCQLHIPTL----SREMSGAKFQ 161
           R G N+ + C   G  PPP + W +    L    E  +   +  +L     + +    + 
Sbjct: 323 RVGDNVEIKCDVTG-TPPPPLVWRRNGADLETLNEPEIRVFNDGSLYLTKVQLIHAGNYT 381

Query: 162 CRVEPPLLEPQFRDVTIKLFLKPQFVRVTGS-GATRAGQNRSFVCTTRGSKPAPNIDWFI 220
           C         Q   +TI     P+ V+VT    A R  +  +  C   G +P P + W  
Sbjct: 382 CHAVRNQDVVQTHVLTIHTI--PE-VKVTPRFQAKRLKEEANIRCHVAG-EPLPRVQWLK 437

Query: 221 NSRLVDSTMTE-VEVDGDVTKSILTWHVRREDSGRQLVCRVSN 262
           N   ++    +  ++ G+ TK I+  +V   D+G  + C+ S+
Sbjct: 438 NDEALNHDQPDKYDLIGNGTKLIIK-NVDYADTGAYM-CQASS 478


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 153 REMSGAKFQCRVEPPLLEP 171
           +E+SGA+ +  VE  LL+P
Sbjct: 699 KELSGAEEEKEVEKALLKP 717


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,053
Number of Sequences: 429
Number of extensions: 4236
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of query: 281
length of database: 140,377
effective HSP length: 57
effective length of query: 224
effective length of database: 115,924
effective search space: 25966976
effective search space used: 25966976
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)