GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004749-TA|BGIBMGA004749-PA|undefined
         (629 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    37   4e-04
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   7.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   7.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   10.0 

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 37.1 bits (82), Expect = 4e-04
 Identities = 42/217 (19%), Positives = 93/217 (42%), Gaps = 18/217 (8%)

Query: 237 KGGETNLVKTIAEFSNMTLIVRLSAIEENWGIIYANGTA------TGAYGVLRNDSVDIV 290
           KG   +L+K +++  N T  + LS   +    I  N +       TG  G L N+  D++
Sbjct: 460 KGYCMDLLKELSKTINFTYSLALSPDGQFGNYIIKNNSVGGKKEWTGLIGELVNERADMI 519

Query: 291 FGNIEVTKQIRKWFHPTISYTQDEITWCLPKAGQASAWDNLVIIFQWTIWVATFTSLILM 350
              + +  +  ++   +  +    IT    K  ++S   + +  F  T+W+    S+ ++
Sbjct: 520 VAPLTINPERAEFIEFSKPFKYQGITILEKKPSRSSTLVSFLQPFSNTLWILVMVSVHVV 579

Query: 351 GLLFHYM-----YYREKNKKITKWPTNSLLMTFSMLLGWG-------SHFEPKTATFRIL 398
            L+ + +     + R K         ++L ++ ++   WG           P++ + R+L
Sbjct: 580 ALVLYLLDRFSPFGRFKLANTDGTEEDALNLSSAVWFAWGVLLNSGIGEGTPRSFSARVL 639

Query: 399 IFGWLCFSINMGISYESFLRSFLMHPRFEKQIATESD 435
              W  F++ +  SY + L +FL+  R + ++   +D
Sbjct: 640 GMVWAGFAMIIVASYTANLAAFLVLERPKTKLTGIND 676


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 7.6
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 10/68 (14%)

Query: 105 PSWNPLAKAVVFYQIKGNESAQRIAIEFINELREHKFFRSIIFINNGTESGVTSYTWRPY 164
           P  +P A     + + GN   Q++A E   + ++H         NNG  S +++ ++ PY
Sbjct: 95  PVGSPSAALQPQHVVYGNPQQQQLAAE-TQQQQQH---------NNGYASPMSTSSYDPY 144

Query: 165 SENNCGGK 172
           S N+  G+
Sbjct: 145 SPNSKIGR 152


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 7.6
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 479 AALNRDFAVVSSRR-QAEYQDQKLGKGASLIYCFPESDNLYKYSVVLLARKWFPMLERFN 537
           AA +R  A  SS   +AE +        S    FP +   + +S+  LA +  P+  +F 
Sbjct: 268 AASDRPPASASSNEHEAESEHTSTPNFLSEAKIFPPTPGSFNFSMAALATEHTPLSVKFP 327

Query: 538 GI 539
           G+
Sbjct: 328 GM 329


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 10.0
 Identities = 12/57 (21%), Positives = 26/57 (45%)

Query: 51  LKTIHSSIKYSVMAKDSFYPHANASHFPEKAKNYMLILEERTELKRNIFQLNKLPSW 107
           +K  + S     + K++      A H  + A + +L++ +     + +  LNKL S+
Sbjct: 370 MKISNLSFDKQSLLKENTVTCQEAMHMLKNADSQLLVISDDNIHIKGVISLNKLTSY 426


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.137    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,408
Number of Sequences: 429
Number of extensions: 8119
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 4
length of query: 629
length of database: 140,377
effective HSP length: 62
effective length of query: 567
effective length of database: 113,779
effective search space: 64512693
effective search space used: 64512693
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 46 (22.6 bits)