GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004748-TA|BGIBMGA004748-PA|IPR000742|EGF-like, type 3,
IPR001791|Laminin G, IPR008985|Concanavalin A-like lectin/glucanase,
IPR012680|Laminin G, subdomain 2, IPR006209|EGF-like
         (1417 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           30   0.15 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    29   0.36 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   4.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   4.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   7.7  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 29.9 bits (64), Expect = 0.15
 Identities = 31/124 (25%), Positives = 45/124 (36%), Gaps = 12/124 (9%)

Query: 1201 LPDHDNIHAATFGVHTETNRKTTPDDHTHTAHFTPTDRHE-----EEPTHTTAEDTNHMP 1255
            LP H N  ++ F         TTP+ + H    TP  R       E+  H+     N   
Sbjct: 61   LPGHINCDSSKFEEDLMNKLPTTPEYNNHLYGSTPDSRDYFSRPFEKRLHSRLPGRNFNL 120

Query: 1256 EYEDRNE-NEIEARTPTYEIEGEQDRAPGRVHPDYNGYEHEITTKWYHPKTTDNRVVPPE 1314
               D N  NE+E++   Y      D   G +  DY G   E+   W     T + +   +
Sbjct: 121  LRADANSVNELESQGFNY------DPGRGHIEDDYVGPAMELVYAWSTIDYTYDSIEARD 174

Query: 1315 SEFF 1318
            S  F
Sbjct: 175  SAIF 178


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 28.7 bits (61), Expect = 0.36
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 577 ASTLEISTLHLGGLYHPE---EEIQMTSTLPNFVGYIQKFVFNGIKYIDMAKALGVGSGE 633
           +S+  IS+      + P+   E+    S LPNFVGY  K +    K +D+  A      +
Sbjct: 373 SSSSSISSSEENDFWQPKPTLEDAPQNSLLPNFVGYKGKHIGKSGK-VDVINAAKELIFQ 431

Query: 634 EHNRIYDTSNI 644
             N + D SNI
Sbjct: 432 IANELEDASNI 442


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 682 TY-LDFYFRTTEMDGLLFYNGGKKQDFIAIELVS 714
           TY +D YFR + +D  L + GGK+   ++I +++
Sbjct: 50  TYSMDCYFRQSWVDRRLAFQGGKETLALSISMLA 83


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 232 ATDSADPVTFTTRDAHLILPKWEAVKTG 259
           +TD++ P T TT  A   LP   A  TG
Sbjct: 210 STDASTPATVTTTGATTTLPAASATGTG 237


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 227 EYSCIATDSADPVTFTTRDAHLILPKW 253
           +Y+C+A + A  V +T +    + P+W
Sbjct: 686 DYTCVAANPAAEVRYTAKLQVKVPPRW 712


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 392,380
Number of Sequences: 429
Number of extensions: 17026
Number of successful extensions: 32
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 8
length of query: 1417
length of database: 140,377
effective HSP length: 66
effective length of query: 1351
effective length of database: 112,063
effective search space: 151397113
effective search space used: 151397113
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)