GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004746-TA|BGIBMGA004746-PA|IPR009057|Homeodomain-like
         (233 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.7  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 39  LANHFNSSITSFPRTPSQLRLKWENLKKSARKRCADMRNKLNKTGGGRDCF 89
           +A  + S  T+F   P+   +     K S+  +  D+RNK +   G +D F
Sbjct: 458 IAESYGSGSTNFNERPAVAVVS----KSSSINKLEDLRNKKSCHSGYKDSF 504


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 39  LANHFNSSITSFPRTPSQLRLKWENLKKSARKRCADMRNKLNKTGGGRDCF 89
           +A  + S  T+F   P+   +     K S+  +  D+RNK +   G +D F
Sbjct: 458 IAESYGSGSTNFNERPAVAVVS----KSSSINKLEDLRNKKSCHSGYKDSF 504


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 39  LANHFNSSITSFPRTPSQLRLKWENLKKSARKRCADMRNKLNKTGGGRDCF 89
           +A  + S  T+F   P+   +     K S+  +  D+RNK +   G +D F
Sbjct: 458 IAESYGSGSTNFNERPAVAVVS----KSSSINKLEDLRNKKSCHSGYKDSF 504


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 57  LRLKWENLKKSARKRCADMRNKLNKTGGGRDCFPPDEILD 96
           LR+   +L+K   K   D  N++N    G+     + I+D
Sbjct: 366 LRMLIIDLRKKQLKSLEDWENEMNIITKGKPLIRVENIID 405


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.131    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,631
Number of Sequences: 429
Number of extensions: 2156
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 233
length of database: 140,377
effective HSP length: 56
effective length of query: 177
effective length of database: 116,353
effective search space: 20594481
effective search space used: 20594481
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)