GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004744-TA|BGIBMGA004744-PA|IPR012911|Protein
serine/threonine phosphatase 2C, C-terminal
         (78 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    20   3.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    19   5.4  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              19   9.4  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.2 bits (40), Expect = 3.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 58  FYPDHVDSSERFNCEDLAD 76
           FY  H     R+NCE L +
Sbjct: 234 FYYMHQQIMARYNCERLCN 252


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 19.4 bits (38), Expect = 5.4
 Identities = 6/16 (37%), Positives = 8/16 (50%)

Query: 58  FYPDHVDSSERFNCED 73
           F   H+   + FN ED
Sbjct: 460 FIQHHIQRQDEFNAED 475


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 18.6 bits (36), Expect = 9.4
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 70  NCEDLADSN 78
           NC+D+ +SN
Sbjct: 102 NCKDITESN 110


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.133    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,437
Number of Sequences: 429
Number of extensions: 332
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 78
length of database: 140,377
effective HSP length: 47
effective length of query: 31
effective length of database: 120,214
effective search space:  3726634
effective search space used:  3726634
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.5 bits)
S2: 36 (18.6 bits)