Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA004741-TA|BGIBMGA004741-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(557 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569719-1|AAS86672.1| 401|Apis mellifera complementary sex det... 30 0.044
AY569718-1|AAS86671.1| 401|Apis mellifera complementary sex det... 30 0.044
AY569715-1|AAS86668.1| 401|Apis mellifera complementary sex det... 30 0.044
AY569713-1|AAS86666.1| 401|Apis mellifera complementary sex det... 30 0.044
AY569711-1|AAS86664.1| 401|Apis mellifera complementary sex det... 30 0.044
AY569702-1|AAS86655.1| 400|Apis mellifera complementary sex det... 30 0.044
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 30 0.044
DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex det... 28 0.23
DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex det... 28 0.23
DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex det... 28 0.23
DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex det... 28 0.23
DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex det... 28 0.23
DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex det... 28 0.23
DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex det... 28 0.23
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 28 0.23
AY569714-1|AAS86667.1| 401|Apis mellifera complementary sex det... 27 0.31
DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex det... 27 0.41
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 25 2.2
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 25 2.2
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 23 6.6
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 23 8.8
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 23 8.8
>AY569719-1|AAS86672.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 30.3 bits (65), Expect = 0.044
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 41 TTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDD 100
TT+ +++ D I N +DV +T + + E+ +++ L K N +TVL + +
Sbjct: 141 TTTSDELKRDII-NPEDVMLKRRTGE-GSKPIFEREEIKNILNKTNEITEHRTVLAVNIE 198
Query: 101 KGEND 105
K EN+
Sbjct: 199 KSENE 203
>AY569718-1|AAS86671.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 30.3 bits (65), Expect = 0.044
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 41 TTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDD 100
TT+ +++ D I N +DV +T + + E+ +++ L K N +TVL + +
Sbjct: 141 TTTSDELKRDII-NPEDVMLKRRTGE-GSKPIFEREEIKNILNKTNEITEHRTVLAVNIE 198
Query: 101 KGEND 105
K EN+
Sbjct: 199 KSENE 203
>AY569715-1|AAS86668.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 30.3 bits (65), Expect = 0.044
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 41 TTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDD 100
TT+ +++ D I N +DV +T + + E+ +++ L K N +TVL + +
Sbjct: 141 TTTSDELKRDII-NPEDVMLKRRTGE-GSKPIFEREEIKNILNKTNEITEHRTVLAVNIE 198
Query: 101 KGEND 105
K EN+
Sbjct: 199 KSENE 203
>AY569713-1|AAS86666.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 30.3 bits (65), Expect = 0.044
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 41 TTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDD 100
TT+ +++ D I N +DV +T + + E+ +++ L K N +TVL + +
Sbjct: 141 TTTSDELKRDII-NPEDVMLKRRTGE-GSKPIFEREEIKNILNKTNEITEHRTVLAVNIE 198
Query: 101 KGEND 105
K EN+
Sbjct: 199 KSENE 203
>AY569711-1|AAS86664.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 30.3 bits (65), Expect = 0.044
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 41 TTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDD 100
TT+ +++ D I N +DV +T + + E+ +++ L K N +TVL + +
Sbjct: 141 TTTSDELKRDII-NPEDVMLKRRTGE-GSKPIFEREEIKNILNKTNEITEHRTVLAVNIE 198
Query: 101 KGEND 105
K EN+
Sbjct: 199 KSENE 203
>AY569702-1|AAS86655.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 30.3 bits (65), Expect = 0.044
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 41 TTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDD 100
TT+ +++ D I N +DV +T + + E+ +++ L K N +TVL + +
Sbjct: 141 TTTSDELKRDII-NPEDVMLKRRTGE-GSKPIFEREEIKNILNKTNEITEHRTVLAVNIE 198
Query: 101 KGEND 105
K EN+
Sbjct: 199 KSENE 203
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 30.3 bits (65), Expect = 0.044
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 41 TTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDD 100
TT+ +++ D I N +DV +T + + E+ +++ L K N +TVL + +
Sbjct: 141 TTTSDELKRDII-NPEDVMLKRRTGE-GSKPIFEREEIKNILNKTNEITEHRTVLAVNIE 198
Query: 101 KGEND 105
K EN+
Sbjct: 199 KSENE 203
>DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 27.9 bits (59), Expect = 0.23
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 83 QKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSSTWGEYASYITYKDN 141
+++NS + E+ + E +D T + E+ K+P K I+ S +Y++Y Y +N
Sbjct: 45 REQNSYKNEREYQKYRETSKERSRDRT--ERERCKEP-KIISSLSNNYKYSNYNNYNNN 100
>DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 27.9 bits (59), Expect = 0.23
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 83 QKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSSTWGEYASYITYKDN 141
+++NS + E+ + E +D T + E+ K+P K I+ S +Y++Y Y +N
Sbjct: 45 REQNSYKNEREYQKYRETSKERSRDRT--ERERCKEP-KIISSLSNNYKYSNYNNYNNN 100
>DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 27.9 bits (59), Expect = 0.23
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 83 QKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSSTWGEYASYITYKDN 141
+++NS + E+ + E +D T + E+ K+P K I+ S +Y++Y Y +N
Sbjct: 45 REQNSYKNEREYQKYRETSKERSRDRT--ERERCKEP-KIISSLSNNYKYSNYNNYNNN 100
>DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 27.9 bits (59), Expect = 0.23
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 83 QKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSSTWGEYASYITYKDN 141
+++NS + E+ + E +D T + E+ K+P K I+ S +Y++Y Y +N
Sbjct: 45 REQNSYKNEREYQKYRETSKERSRDRT--ERERCKEP-KIISSLSNNYKYSNYNNYNNN 100
>DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 27.9 bits (59), Expect = 0.23
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 83 QKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSSTWGEYASYITYKDN 141
+++NS + E+ + E +D T + E+ K+P K I+ S +Y++Y Y +N
Sbjct: 45 REQNSYKNEREYQKYRETSKERSRDRT--ERERCKEP-KIISSLSNNYKYSNYNNYNNN 100
>DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 27.9 bits (59), Expect = 0.23
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 83 QKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSSTWGEYASYITYKDN 141
+++NS + E+ + E +D T + E+ K+P K I+ S +Y++Y Y +N
Sbjct: 45 REQNSYKNEREYQKYRETSKERSRDRT--ERERCKEP-KIISSLSNNYKYSNYNNYNNN 100
>DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 27.9 bits (59), Expect = 0.23
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 83 QKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSSTWGEYASYITYKDN 141
+++NS + E+ + E +D T + E+ K+P K I+ S +Y++Y Y +N
Sbjct: 45 REQNSYKNEREYQKYRETSKERSRDRT--ERERCKEP-KIISSLSNNYKYSNYNNYNNN 100
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 27.9 bits (59), Expect = 0.23
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 39 EDTTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLNIT 98
+ TT+ ++ D I N +DV +T + + E+ +++ L K N + TVL +
Sbjct: 131 KSTTTTVEVKRDII-NPEDVILIRRTGE-GSKPIFEREEIKNVLTKINKIKEHDTVLVVN 188
Query: 99 DDKGEND 105
+K EN+
Sbjct: 189 IEKSENE 195
Score = 23.8 bits (49), Expect = 3.8
Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 8/130 (6%)
Query: 422 DLREECGKCGDVRKVVLYDRHPEGVAQITMKEPEQADAVVQLINGRWFGKRQITAEIWDG 481
D R+ + V+L D+ PEG+ QI E ++ ++L R + T + +
Sbjct: 86 DSRDRSNASNTSKTVILSDKGPEGI-QINATELQK----IKLEIHRDLPGKSTTTTV-EV 139
Query: 482 KTKYKIAETDADINQRLDKWGKFLEEKEDDNKVIKLPVEEKDTDELKVEEV-SIEKENTQ 540
K I D + +R + K + E+E+ V+ + K+ D + V + E E+ +
Sbjct: 140 KRDI-INPEDVILIRRTGEGSKPIFEREEIKNVLTKINKIKEHDTVLVVNIEKSENESKK 198
Query: 541 YLSEKSDINN 550
Y + + + N
Sbjct: 199 YATSSNSLRN 208
>AY569714-1|AAS86667.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 27.5 bits (58), Expect = 0.31
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 41 TTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDD 100
TT+ +++ I N +DV +T + + E+ +++ L K N +TVL + +
Sbjct: 141 TTTSDELKRGII-NPEDVMLKRRTGE-GSKPIFEREEIKNILNKTNEITEHRTVLAVNIE 198
Query: 101 KGEND 105
K EN+
Sbjct: 199 KSENE 203
>DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 27.1 bits (57), Expect = 0.41
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 83 QKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSSTWGEYASYITYKDN 141
+++NS + E+ + E +D T + E++++P K I+ S Y++Y Y +N
Sbjct: 45 REQNSYKNEREYRKYRETSKERSRDRT--ERERSREP-KIISSLSNNYNYSNYNNYNNN 100
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 24.6 bits (51), Expect = 2.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 111 EDNEKTKKPSKSITDSSTWGEYASYITY 138
ED E + SKS T S W +A+ I +
Sbjct: 383 EDVENNSEVSKSRTKESAWRHFAAIIEW 410
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 24.6 bits (51), Expect = 2.2
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 5/109 (4%)
Query: 38 IEDTTSVEDINNDKIQN-VQDVKT-TSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVL 95
I + TS+ NN N D K SQ V + ES+ K+ S E
Sbjct: 863 IPEQTSISHENNQPTMNKCSDRKRPASQATSVKAEPGSIMAMSESS--KKVLSPGELLSS 920
Query: 96 NITDDKGENDK-DNTLEDNEKTKKPSKSITDSSTWGEYASYITYKDNEA 143
+++D G + D + N+K K + I D S+ + S YK +E+
Sbjct: 921 CVSNDGGCSSLVDVSTPVNKKVYKQNDYIVDESSSSSFYSSFLYKSSES 969
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 23.0 bits (47), Expect = 6.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 107 DNTLEDNEKTKKPSKSITDSSTWGEYASYITY 138
D TL++ K+ S S T+S+ GE AS Y
Sbjct: 479 DVTLDEAVKSPLGSVSSTESTCSGEVASLTEY 510
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 22.6 bits (46), Expect = 8.8
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 104 NDKDNTLEDNEKTKKPSKSITDSSTWGEYASYITYKDNEAVYTD 147
+DKD+ DNE K + SS+ E + I + + ++ TD
Sbjct: 86 DDKDDDESDNENIKSQKEFPNSSSSDDERPNSIHQRASFSLNTD 129
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 22.6 bits (46), Expect = 8.8
Identities = 11/42 (26%), Positives = 25/42 (59%)
Query: 515 IKLPVEEKDTDELKVEEVSIEKENTQYLSEKSDINNVKLEIN 556
IK VE+ + D++K E + ++ +E+ + N+ KL+++
Sbjct: 292 IKKEVEDMEYDDIKTELSTGMNDDIPPETEEEEENDKKLDLD 333
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.310 0.129 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,325
Number of Sequences: 429
Number of extensions: 6796
Number of successful extensions: 32
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 25
length of query: 557
length of database: 140,377
effective HSP length: 61
effective length of query: 496
effective length of database: 114,208
effective search space: 56647168
effective search space used: 56647168
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 46 (22.6 bits)
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