GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004739-TA|BGIBMGA004739-PA|IPR002293|Amino
acid/polyamine transporter I
         (521 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   8.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   8.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 9/42 (21%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 360  LVFILTARYNAMILEWRTGANGDLEVV------TRAHGNVSD 395
            ++++ ++  ++++L W++G NG   +         AHGN+ +
Sbjct: 1409 VLYVTSSTSSSILLHWKSGHNGGASLTGYTLHYRTAHGNLDE 1450


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 9/42 (21%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 360  LVFILTARYNAMILEWRTGANGDLEVV------TRAHGNVSD 395
            ++++ ++  ++++L W++G NG   +         AHGN+ +
Sbjct: 1405 VLYVTSSTSSSILLHWKSGHNGGASLTGYTLHYRTAHGNLDE 1446


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 29  VVIGGGIYEIAKGNTSHLNKGFEGSTTNPGSIAL 62
           V+I    Y +      +LNK F  S   PG++ L
Sbjct: 190 VIIASMQYRVGAFGFLYLNKHFTNSEEAPGNMGL 223


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 29  VVIGGGIYEIAKGNTSHLNKGFEGSTTNPGSIAL 62
           V+I    Y +      +LNK F  S   PG++ L
Sbjct: 190 VIIASMQYRVGAFGFLYLNKHFTNSEEAPGNMGL 223


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.141    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,205
Number of Sequences: 429
Number of extensions: 6467
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 4
length of query: 521
length of database: 140,377
effective HSP length: 61
effective length of query: 460
effective length of database: 114,208
effective search space: 52535680
effective search space used: 52535680
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 46 (22.6 bits)