GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004738-TA|BGIBMGA004738-PA|IPR002293|Amino
acid/polyamine transporter I
         (391 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   2.6  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              23   4.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   5.9  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              23   5.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 201 NIIENAPPETPSANQDEISDKCLS 224
           N  +NA   TP    DE+ DK LS
Sbjct: 679 NTTQNASATTPPPQVDEVDDKELS 702


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 152 DVHPDYKDNAIKLASLAALCKMTSKH 177
           D+HP+     I LA L    ++  KH
Sbjct: 162 DIHPELNTQGIALADLTQRAQIGQKH 187


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)

Query: 167 LAALCKMTSKHNAETLDALKREIKTLQNNCL 197
           ++A+C   S   A TLD LK  + T+Q+ C+
Sbjct: 7   ISAICVCVS---AMTLDELKSGLHTVQSVCM 34


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 246 LLTSQFLNEIKEKTGQIEELTAFTKGSIRDVD 277
           ++T+QFLN++K+ +  +       K  I D D
Sbjct: 420 IVTAQFLNQLKKSSVLVHTKNGRLKYQISDND 451


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 13/51 (25%), Positives = 23/51 (45%)

Query: 179 AETLDALKREIKTLQNNCLNVCNIIENAPPETPSANQDEISDKCLSYIQAL 229
           A T + LK  I+TLQ  C+      +    E  + N +   +   SY++ +
Sbjct: 16  AMTHEELKTGIQTLQPICVGETGTSQKIIDEVYNGNVNVEDENVQSYVECM 66


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 8/25 (32%), Positives = 16/25 (64%)

Query: 288  TIAQEAMSKPIQKYGQVSSEHVKNA 312
            T++Q+   + + KYG++   H +NA
Sbjct: 1084 TVSQQKQKRRMVKYGKLVMIHEENA 1108


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.131    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,073
Number of Sequences: 429
Number of extensions: 3943
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 6
length of query: 391
length of database: 140,377
effective HSP length: 59
effective length of query: 332
effective length of database: 115,066
effective search space: 38201912
effective search space used: 38201912
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)