GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004736-TA|BGIBMGA004736-PA|IPR000215|Proteinase
inhibitor I4, serpin
         (303 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.83 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.83 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.83 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    25   1.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.4  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic
          acetylcholine receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 4/21 (19%)

Query: 4  GNPDTKR----LVENYNQLTR 20
          GNPD KR    L+ NYN+L R
Sbjct: 25 GNPDAKRLYDDLLSNYNKLVR 45


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic
          acetylcholine receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 4/21 (19%)

Query: 4  GNPDTKR----LVENYNQLTR 20
          GNPD KR    L+ NYN+L R
Sbjct: 25 GNPDAKRLYDDLLSNYNKLVR 45


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic
          acetylcholine receptor alpha3subunit protein.
          Length = 566

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 4/21 (19%)

Query: 4  GNPDTKR----LVENYNQLTR 20
          GNPD KR    L+ NYN+L R
Sbjct: 21 GNPDAKRLYDDLLSNYNKLVR 41


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
          acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 4/21 (19%)

Query: 4  GNPDTKR----LVENYNQLTR 20
          GNPD KR    L+ NYN+L R
Sbjct: 17 GNPDAKRLYDDLLSNYNRLIR 37


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 174  EFEFISITLNGGAFTFFVALPD 195
            E+EF ++T+ GG       LPD
Sbjct: 1546 EYEFATLTVTGGTIAPARELPD 1567


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,504
Number of Sequences: 429
Number of extensions: 3013
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 5
length of query: 303
length of database: 140,377
effective HSP length: 57
effective length of query: 246
effective length of database: 115,924
effective search space: 28517304
effective search space used: 28517304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)