GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004734-TA|BGIBMGA004734-PA|IPR003397|Mitochondrial
import inner membrane translocase, subunit Tim17/22
         (216 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.7  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 6/52 (11%)

Query: 122 KWGWKLSIFTGMFSLIATTISAYRGDTTLIEYTTAGALTGALYKANLGLTAM 173
           KW  K+  FT +F     TI   RG       T  GA+ G  Y     L+ +
Sbjct: 229 KWTGKVVYFTSLFPYALLTILLIRG------LTLPGAMEGLKYYVTPNLSKL 274


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 6/52 (11%)

Query: 122 KWGWKLSIFTGMFSLIATTISAYRGDTTLIEYTTAGALTGALYKANLGLTAM 173
           KW  K+  FT +F     TI   RG       T  GA+ G  Y     L+ +
Sbjct: 282 KWTGKVVYFTSLFPYALLTILLIRG------LTLPGAMEGLKYYVTPNLSKL 327


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,331
Number of Sequences: 429
Number of extensions: 2057
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 216
length of database: 140,377
effective HSP length: 55
effective length of query: 161
effective length of database: 116,782
effective search space: 18801902
effective search space used: 18801902
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)