GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004729-TA|BGIBMGA004729-PA|IPR002108|Actin-binding,
cofilin/tropomyosin type
         (343 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   1.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   8.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   8.9  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 78  SLGHEWLLLSWSPDSAPVRQKMLYASTKATLKQEFGSAH 116
           S+G E++   W PD+  V +K  Y    AT   EF   H
Sbjct: 84  SVGSEFIKNIWVPDTFFVNEKQSYFHI-ATTSNEFIRIH 121


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 78  SLGHEWLLLSWSPDSAPVRQKMLYASTKATLKQEFGSAH 116
           S+G E++   W PD+  V +K  Y    AT   EF   H
Sbjct: 84  SVGSEFIKNIWVPDTFFVNEKQSYFHI-ATTSNEFIRIH 121


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 78  SLGHEWLLLSWSPDSAPVRQKMLYASTKATLKQEFGSAH 116
           S+G E++   W PD+  V +K  Y    AT   EF   H
Sbjct: 23  SVGSEFIKNIWVPDTFFVNEKQSYFHI-ATTSNEFIRIH 60


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 191 VDLQRGSYNYLQFRIDLEEEKINLSKASKILLEELPLQ 228
           + L  G  N++   +DLE E +   +A++     LP++
Sbjct: 62  IRLTYGQTNHISLTLDLEYELVENLQANEKPWSTLPIE 99


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 191 VDLQRGSYNYLQFRIDLEEEKINLSKASKILLEELPLQ 228
           + L  G  N++   +DLE E +   +A++     LP++
Sbjct: 100 IRLTYGQTNHISLTLDLEYELVENLQANEKPWSTLPIE 137


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.131    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,715
Number of Sequences: 429
Number of extensions: 4246
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 7
length of query: 343
length of database: 140,377
effective HSP length: 58
effective length of query: 285
effective length of database: 115,495
effective search space: 32916075
effective search space used: 32916075
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 44 (21.8 bits)