GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004725-TA|BGIBMGA004725-PA|undefined
         (265 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    30   0.025
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.8  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   6.5  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   6.5  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   8.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.6  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   8.6  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 29.9 bits (64), Expect = 0.025
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 82  KLTKKLVNSCQYSKNYKDKTNYE 104
           K+   L NSC YS NY +  NY+
Sbjct: 302 KIISSLSNSCNYSNNYYNNNNYK 324


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 76  NDEYKYKLTKKLVNSCQYSKNYKD 99
           N+ YKY       N+  Y+ NY +
Sbjct: 326 NNNYKYNYNNNNYNNNNYNNNYNN 349


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/40 (25%), Positives = 19/40 (47%)

Query: 86  KLVNSCQYSKNYKDKTNYEDCGCKYYESEEDNNEYKGYNS 125
           K+++S   +  Y +  NY +     Y +  +NN  K Y +
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKN 119


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/40 (25%), Positives = 19/40 (47%)

Query: 86  KLVNSCQYSKNYKDKTNYEDCGCKYYESEEDNNEYKGYNS 125
           K+++S   +  Y +  NY +     Y +  +NN  K Y +
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKN 119


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 85  KKLVNSCQYSKNYKDKTNYED 105
           K + N+  Y  NY +K NY +
Sbjct: 88  KTIHNNNNYKYNYNNKYNYNN 108


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 15/73 (20%), Positives = 26/73 (35%)

Query: 55  GKSNTKGXXXXXXYDGSDNAGNDEYKYKLTKKLVNSCQYSKNYKDKTNYEDCGCKYYESE 114
           G+   +G           N G   +  K      N+     +Y ++ N  D   K + + 
Sbjct: 79  GRGKGRGHGKGGSRGRGGNRGRTGFNNKNKDGDDNNDYEDNDYGNQDNRNDRRKKTFAAR 138

Query: 115 EDNNEYKGYNSDE 127
           EDN+E +     E
Sbjct: 139 EDNDEEEAQKPKE 151


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/38 (23%), Positives = 16/38 (42%)

Query: 86  KLVNSCQYSKNYKDKTNYEDCGCKYYESEEDNNEYKGY 123
           K+++S   +  Y +  NY +     Y +      YK Y
Sbjct: 313 KIISSLSNNYKYSNYNNYNNYNNNNYNNYNKKLYYKNY 350


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.130    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,742
Number of Sequences: 429
Number of extensions: 1650
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 265
length of database: 140,377
effective HSP length: 57
effective length of query: 208
effective length of database: 115,924
effective search space: 24112192
effective search space used: 24112192
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 43 (21.4 bits)