GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004724-TA|BGIBMGA004724-PA|undefined
         (52 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           19   6.4  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    18   8.4  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    18   8.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    18   8.4  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 18.6 bits (36), Expect = 6.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 30 KGLPKRGFNRHDRI 43
          KGL K G  RH ++
Sbjct: 9  KGLGKGGAKRHRKV 22


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 18.2 bits (35), Expect = 8.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 20  KKVSENTYNHK 30
           K +S N YN+K
Sbjct: 302 KIISSNNYNYK 312


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 18.2 bits (35), Expect = 8.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 20  KKVSENTYNHK 30
           K +S N YN+K
Sbjct: 313 KIISSNNYNYK 323


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 18.2 bits (35), Expect = 8.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 38  NRHDRIGHKLILLK 51
           NRH+    KL++LK
Sbjct: 645 NRHNEDMEKLMMLK 658


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.140    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,974
Number of Sequences: 429
Number of extensions: 512
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 52
length of database: 140,377
effective HSP length: 32
effective length of query: 20
effective length of database: 126,649
effective search space:  2532980
effective search space used:  2532980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.0 bits)
S2: 35 (18.2 bits)