GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004723-TA|BGIBMGA004723-PA|IPR004344|Tubulin-tyrosine
ligase
         (216 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               23   1.7  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   3.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.1  

>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 53  DKYTLSDIHNPYRHLTNSSLNKTGPRFAECK 83
           DK    D+    RHL  S  + T   F +CK
Sbjct: 70  DKNAEVDVQKALRHLPRSMQDSTKKLFNKCK 100


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/38 (23%), Positives = 21/38 (55%)

Query: 150 SLKPWLLEVNLSPALGTNCEADIIVKQPMLHELFDLLG 187
           ++  +L+   +SP +  NC  +  V  P+  +++ +LG
Sbjct: 61  AISDFLMMFCMSPPMVINCYYETWVLGPLFCQIYAMLG 98


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/38 (23%), Positives = 21/38 (55%)

Query: 150 SLKPWLLEVNLSPALGTNCEADIIVKQPMLHELFDLLG 187
           ++  +L+   +SP +  NC  +  V  P+  +++ +LG
Sbjct: 95  AISNFLMMFCMSPPMVINCYYETWVLGPLFCQIYAMLG 132


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.141    0.460 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,520
Number of Sequences: 429
Number of extensions: 2170
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 216
length of database: 140,377
effective HSP length: 55
effective length of query: 161
effective length of database: 116,782
effective search space: 18801902
effective search space used: 18801902
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 42 (21.0 bits)