GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004722-TA|BGIBMGA004722-PA|undefined
         (70 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   0.62 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   0.62 
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    20   2.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    19   4.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    19   5.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    19   5.8  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 0.62
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 43  SEEKWNIWWRSSAFPAA 59
           S ++WN +W    FP+A
Sbjct: 332 SVQQWNSYWGILGFPSA 348


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 0.62
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 43  SEEKWNIWWRSSAFPAA 59
           S ++WN +W    FP+A
Sbjct: 332 SVQQWNSYWGILGFPSA 348



 Score = 18.6 bits (36), Expect = 7.6
 Identities = 6/21 (28%), Positives = 11/21 (52%)

Query: 30  AERGWRMYQGYNGSEEKWNIW 50
           A+RG ++Y  +       N+W
Sbjct: 468 ADRGMKVYYYFFTQRTSTNLW 488


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
          carboxykinase protein.
          Length = 118

 Score = 20.2 bits (40), Expect = 2.5
 Identities = 7/11 (63%), Positives = 10/11 (90%)

Query: 53 SSAFPAACYKT 63
          ++AFP+AC KT
Sbjct: 15 TAAFPSACGKT 25


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
          protein 9 protein.
          Length = 423

 Score = 19.4 bits (38), Expect = 4.4
 Identities = 6/14 (42%), Positives = 7/14 (50%)

Query: 47 WNIWWRSSAFPAAC 60
          +NIWW    F   C
Sbjct: 3  FNIWWLILYFSIVC 16


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.0 bits (37), Expect = 5.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)

Query: 14  RLNDNGTGPNLV 25
           RLN  G  PNLV
Sbjct: 572 RLNKIGKNPNLV 583


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.0 bits (37), Expect = 5.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)

Query: 14  RLNDNGTGPNLV 25
           RLN  G  PNLV
Sbjct: 540 RLNKIGKNPNLV 551


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.136    0.478 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,553
Number of Sequences: 429
Number of extensions: 1008
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 70
length of database: 140,377
effective HSP length: 45
effective length of query: 25
effective length of database: 121,072
effective search space:  3026800
effective search space used:  3026800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
S2: 36 (18.6 bits)