GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004709-TA|BGIBMGA004709-PA|undefined
         (151 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   5.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   5.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.2  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    20   9.5  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    20   9.5  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    20   9.5  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    20   9.5  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/18 (38%), Positives = 14/18 (77%)

Query: 121 EAESEPTLMLVNNDQNDG 138
           EA+ + T +L+ N++N+G
Sbjct: 366 EADFKDTEILIGNNENEG 383


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/18 (38%), Positives = 14/18 (77%)

Query: 121 EAESEPTLMLVNNDQNDG 138
           EA+ + T +L+ N++N+G
Sbjct: 366 EADFKDTEILIGNNENEG 383


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 123 ESEPTLMLVNNDQNDGQEQSAE 144
           E E T+   N+D  D QE S E
Sbjct: 164 EEEQTINRKNSDYLDNQEVSME 185


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 90  RSNTAVDLSNTAPANATAELNVDIGRSDD 118
           RS  + D SNT+  + T  L+  +  SDD
Sbjct: 83  RSPDSRDRSNTSNTSKTVILSDKLESSDD 111


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 90  RSNTAVDLSNTAPANATAELNVDIGRSDD 118
           RS  + D SNT+  + T  L+  +  SDD
Sbjct: 83  RSPDSRDRSNTSNTSKTVILSDKLESSDD 111


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 90  RSNTAVDLSNTAPANATAELNVDIGRSDD 118
           RS  + D SNT+  + T  L+  +  SDD
Sbjct: 83  RSPDSRDRSNTSNTSKTVILSNKLESSDD 111


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 90  RSNTAVDLSNTAPANATAELNVDIGRSDD 118
           RS  + D SNT+  + T  L+  +  SDD
Sbjct: 83  RSPDSRDRSNTSNTSKTVILSDKLESSDD 111


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.126    0.345 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,068
Number of Sequences: 429
Number of extensions: 1067
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 151
length of database: 140,377
effective HSP length: 53
effective length of query: 98
effective length of database: 117,640
effective search space: 11528720
effective search space used: 11528720
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.9 bits)
S2: 40 (20.2 bits)