GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004708-TA|BGIBMGA004708-PA|IPR006693|AB-hydrolase
associated lipase region, IPR000073|Alpha/beta hydrolase fold-1,
IPR008262|Lipase, active site
         (509 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   6.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   7.9  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 45  REKGRSIKHFYVENVRN--KITSYFGINNKDESEYSGDDKQVRIKN 88
           +E+ RS +   + ++ N  K ++Y   NN + + Y+  +K++  KN
Sbjct: 304 KERERSKEPKIISSLSNNYKYSNYNNYNNYNNNNYNNYNKKLYYKN 349


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 450 NLYDQLSNPIEHYVVPLKEFNHIDFLWAKDAPKLVYAKLLQLLEEGVSNN 499
           N  D L   +      L+E  H+ +   +D PK ++ +L QLL   ++ N
Sbjct: 271 NSLDSLPEGLFASTRDLREI-HLAYNGLRDLPKGIFTRLEQLLVLNLAGN 319


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,851
Number of Sequences: 429
Number of extensions: 7925
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 2
length of query: 509
length of database: 140,377
effective HSP length: 61
effective length of query: 448
effective length of database: 114,208
effective search space: 51165184
effective search space used: 51165184
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)