GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004705-TA|BGIBMGA004705-PA|IPR006578|MADF
         (68 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   1.00 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   1.00 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   1.7  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   1.7  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    20   3.0  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    19   5.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    19   7.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    18   9.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 1.00
 Identities = 6/19 (31%), Positives = 10/19 (52%)

Query: 16   QNESTMWDPQKKSHKNGMV 34
            Q+    W P   +H NG++
Sbjct: 1126 QSLQVSWQPPPNTHSNGII 1144


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 1.00
 Identities = 6/19 (31%), Positives = 10/19 (52%)

Query: 16   QNESTMWDPQKKSHKNGMV 34
            Q+    W P   +H NG++
Sbjct: 1122 QSLQVSWQPPPNTHSNGII 1140


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.6 bits (41), Expect = 1.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query: 2   DWNNTKVMEFIELPQN 17
           D N +K+++ IE+P N
Sbjct: 162 DLNTSKLLKQIEIPHN 177


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 20.6 bits (41), Expect = 1.7
 Identities = 9/35 (25%), Positives = 19/35 (54%)

Query: 3   WNNTKVMEFIELPQNESTMWDPQKKSHKNGMVVNV 37
           W+  +VM +    +N + +     K H++G ++NV
Sbjct: 180 WSWDEVMPYYLKSENNTELSRVGTKYHRSGGLMNV 214


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 19.8 bits (39), Expect = 3.0
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 5   NTKVMEFIELPQNESTMWDPQKKSHKNGMVV 35
           NT V  F ++ +N    WD   + + N  ++
Sbjct: 307 NTGVDYFTQINRNGIACWDTNTELNPNTFIL 337


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 19.0 bits (37), Expect = 5.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 25  QKKSHKNGMVVNV 37
           +KK   NG++VN+
Sbjct: 131 KKKGINNGIIVNI 143


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated
          chloride channel protein.
          Length = 428

 Score = 18.6 bits (36), Expect = 7.0
 Identities = 7/29 (24%), Positives = 14/29 (48%)

Query: 9  MEFIELPQNESTMWDPQKKSHKNGMVVNV 37
          +EF +L   +  ++D  +   K+G    V
Sbjct: 35 LEFFDLLPEDPKLYDKMRPPKKDGQATVV 63


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 18.2 bits (35), Expect = 9.3
 Identities = 6/19 (31%), Positives = 11/19 (57%)

Query: 3   WNNTKVMEFIELPQNESTM 21
           +NN    E + +  +EST+
Sbjct: 202 YNNNTEWEIVHMSHSESTI 220


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.127    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,928
Number of Sequences: 429
Number of extensions: 635
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 68
length of database: 140,377
effective HSP length: 45
effective length of query: 23
effective length of database: 121,072
effective search space:  2784656
effective search space used:  2784656
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.8 bits)
S2: 35 (18.2 bits)