GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004702-TA|BGIBMGA004702-PA|IPR001834|NADH:cytochrome b5
reductase (CBR), IPR001709|Flavoprotein pyridine nucleotide cytochrome
reductase, IPR008333|Oxidoreductase FAD-binding region,
IPR001433|Oxidoreductase FAD/NAD(P)-binding
         (392 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    25   1.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   1.5  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    24   2.6  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    24   2.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   4.5  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   4.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   4.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.8  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 33  KYENSLKYGQVTNNTLENGISQIKYTNFVV 62
           KY N   Y    NN   N   ++ Y N+++
Sbjct: 323 KYSNYNNYNNYNNNNYNNYNKKLYYKNYII 352


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 116 IKLKKNETDLWDFFIVVKKGNIGSVSLYLYNLQKGDI 152
           +K   +ETD+W+   ++ K  I  V  YL   +  D+
Sbjct: 234 MKTLLSETDIWEVEQILAKKEIKGVPTYLIKWKNWDL 270


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 117 KLKKNETDLWDFFI 130
           K  KN+  LWDFF+
Sbjct: 80  KAMKNDVILWDFFV 93


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 117 KLKKNETDLWDFFI 130
           K  KN+  LWDFF+
Sbjct: 54  KAMKNDVILWDFFV 67


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 8/32 (25%), Positives = 19/32 (59%)

Query: 186 SIIQQILENEDDMTKIILIYCTKNIETIILRE 217
           S  QQ++E ++   ++ L+Y +K    +I ++
Sbjct: 216 SFTQQLIEMKNAQARVYLLYASKMDANVIFQD 247


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
          protein.
          Length = 139

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 15 CGSGCNPCIFDIYKEQLK 32
          C S  NPCI+ ++ +  +
Sbjct: 53 CNSAINPCIYALFSKDFR 70


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 15  CGSGCNPCIFDIYKEQLK 32
           C S  NPCI+ ++ +  +
Sbjct: 501 CNSAINPCIYALFSKDFR 518


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)

Query: 172 IIMIAQGTGLAPF 184
           +I++  GTG+APF
Sbjct: 968 MILVGPGTGIAPF 980


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.140    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,906
Number of Sequences: 429
Number of extensions: 5824
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 8
length of query: 392
length of database: 140,377
effective HSP length: 59
effective length of query: 333
effective length of database: 115,066
effective search space: 38316978
effective search space used: 38316978
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 45 (22.2 bits)