GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004699-TA|BGIBMGA004699-PA|IPR013069|BTB/POZ,
IPR011705|BTB/Kelch-associated, IPR006652|Kelch repeat,
IPR011043|Galactose oxidase, central
         (524 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          27   0.29 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   4.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.7  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 27.5 bits (58), Expect = 0.29
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 17  QGVCPSAMAWLIYFMYTGKIRITEVTVCQLLPAATMFQI 55
           Q VC + + ++I F+Y G+I +++  +  LL  A   +I
Sbjct: 79  QDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKI 117


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 356 VARSGAGVAAMNQFIYVVGGYD 377
           V R+GAGV AMN     VG  D
Sbjct: 369 VGRNGAGVGAMNANGEAVGEVD 390


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 334 RVASVECYHPENNRWTEVAPMHVARSGAGVAAMNQFIYVV--GGYDGSQQLASVERYHTE 391
           R + V+     +NR TE++P+ V  S   +   N +I +V    +     L  V+ Y   
Sbjct: 593 RDSKVKTLDASHNRITELSPLSVPDSVELLFINNNYINLVRPNTFTDKVNLTRVDMYANM 652

Query: 392 KNTWELVA 399
             T EL +
Sbjct: 653 IETMELTS 660



 Score = 23.0 bits (47), Expect = 6.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 109  EDRRHPRMEHILQAVRCQYLT 129
            ED R P  EHI  ++   Y T
Sbjct: 1324 EDHRRPLSEHIYSSIDSDYST 1344


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.133    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,055
Number of Sequences: 429
Number of extensions: 6355
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 4
length of query: 524
length of database: 140,377
effective HSP length: 61
effective length of query: 463
effective length of database: 114,208
effective search space: 52878304
effective search space used: 52878304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)