GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004696-TA|BGIBMGA004696-PA|IPR000159|RA
         (399 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   8.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 8/21 (38%), Positives = 15/21 (71%)

Query: 356 KDVIDNFTFITKSSIYIYPSI 376
           KD++   +++ + S YIYPS+
Sbjct: 159 KDLVRVVSWLQEPSFYIYPSL 179


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 8/21 (38%), Positives = 15/21 (71%)

Query: 356 KDVIDNFTFITKSSIYIYPSI 376
           KD++   +++ + S YIYPS+
Sbjct: 159 KDLVRVVSWLQEPSFYIYPSL 179


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 9/77 (11%)

Query: 8   MLEREALRNMIHQWNANRLDLFALSEPNENLEFHGVMRFYFQDLGQKIATKCIRVASDAT 67
           + ER   R    + + + +D      P  NL++H   R + +DL     T+ +     +T
Sbjct: 296 LCERHQKRYFFGRDSVDHVDFDEFLPPPPNLDYHDYSRQFPRDL----TTQTV-----ST 346

Query: 68  VSDVIEILIEKFRPDMR 84
            +DV++   E++ P ++
Sbjct: 347 TADVLQEEEEEYSPSVQ 363


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,227
Number of Sequences: 429
Number of extensions: 3694
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 399
length of database: 140,377
effective HSP length: 59
effective length of query: 340
effective length of database: 115,066
effective search space: 39122440
effective search space used: 39122440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)