GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004693-TA|BGIBMGA004693-PA|undefined
         (370 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   0.59 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.79 
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    25   1.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.3  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   9.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   9.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.8 bits (54), Expect = 0.59
 Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 5/114 (4%)

Query: 90  ESLMRDGLSLVNVTRRELADGLRTLARRQRDAR--LTSADIEANFARRINENTYKIDLKM 147
           E+ +RD ++ + + RR+  DG       +   R  +   D+  N   R+ EN+  +DL+ 
Sbjct: 180 ENRLRD-INDIGLNRRDSDDGSDGNDGDESSCRADIRILDLSRNEITRLQENSPLLDLRQ 238

Query: 148 KEVLEIQKRFMNSCERIQLDGPT--QVADVLDKLIDSLINKTAATFHELQNIQV 199
            + L +Q+  +       L G T  +  +     +DSL     A+  +L+ I +
Sbjct: 239 LQELHLQRNAIVEIAGDALTGLTVLRTFNASYNSLDSLPEGLFASTRDLREIHL 292


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.4 bits (53), Expect = 0.79
 Identities = 25/110 (22%), Positives = 54/110 (49%), Gaps = 7/110 (6%)

Query: 89  LESLMRDGLSLVNVTRRELADGLRTLARRQRDARLTSA-DIEANFARRINENTYKIDLKM 147
           L +L+  GL + +++  + +  L  LA  Q+   L  A D E   ++++ E+  K+D +M
Sbjct: 330 LNALIATGLYINDLSMHDFSRDLM-LAGTQQSVELKLALDQEQLKSKKLEESMRKLDEEM 388

Query: 148 KEVLEIQKRFM--NSCERIQL-DGPTQVADVLDKLIDSLINKTAATFHEL 194
           K   E+  + +     +R++  + P    ++ D +  S++     TF E+
Sbjct: 389 KRTDELLYQMIPKQVADRLRNGENPIDTCEMFDSV--SILFSDVVTFTEI 436


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 28  YSPNTHSSTTTVKENTQKLERSQTNLVAQLAQNLTSHID 66
           Y+ N+     T   NT +L++S+ +L  + A     +ID
Sbjct: 85  YAANSQPPRITSVPNTSRLDKSEISLATKQACGFIDNID 123


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 11/42 (26%), Positives = 17/42 (40%)

Query: 32  THSSTTTVKENTQKLERSQTNLVAQLAQNLTSHIDTHKHLLE 73
           T ++TTT          + T L+ Q       H+  H H L+
Sbjct: 111 TTTTTTTTATAAATATTTATGLIKQETLQRHHHLQNHHHHLQ 152


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 97  LSLVNVTRRELADGLRTLARRQRDARLTSADIEANF 132
           +++V  T   LA   R      +DA +TS  +E NF
Sbjct: 3   VAVVLCTTATLAAPQRPSGGADKDAVITSQQLEVNF 38


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 176 LDKLIDSLINKTAATFHELQNIQVTM 201
           LD++I+   +K   T+H+ Q +  +M
Sbjct: 153 LDEIIERNGDKPPLTYHQFQTVVASM 178


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.126    0.344 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,997
Number of Sequences: 429
Number of extensions: 2843
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 6
length of query: 370
length of database: 140,377
effective HSP length: 59
effective length of query: 311
effective length of database: 115,066
effective search space: 35785526
effective search space used: 35785526
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 44 (21.8 bits)