GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004688-TA|BGIBMGA004688-PA|IPR005317|Peptidase M49
         (721 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       27   0.71 
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    27   0.71 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   2.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   8.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   8.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 26.6 bits (56), Expect = 0.71
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 361 KDSFLRPDFTSLDVLTFSGSGIPAGINIPNYDEIRQNEGFKNV 403
           K+ ++ P+  + +   F  +G+  GIN   YD I+ N    NV
Sbjct: 150 KEQYIPPELPNDEKSLFE-NGVEIGINFDKYDNIQVNVSGDNV 191



 Score = 25.0 bits (52), Expect = 2.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 384 AGINIPNYDEIRQNEGFKNVSLGNVIPAAYKEYT 417
           +G N+P   E  +  G +N+ L N+  + YK+ T
Sbjct: 187 SGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPT 220


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 0.71
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 8/84 (9%)

Query: 455 LRQNADGTFNFDKEKVKNPLTDKGIESWYSEGETYDSKFTTLGSAFEECRA--EAVGLYL 512
           L++  D TF+   +   NP   +   + + + E+    F      F   R   +A G+Y 
Sbjct: 214 LQRKKDTTFDDYLDYAINPFDYEKRSTDFQDVESGSESFKRARMGFHGMRGKRDAAGIYG 273

Query: 513 SLVPEILKIFGYEGQEAEDVTYVN 536
           S    +  IFGY+G      TYVN
Sbjct: 274 SNSSTVGTIFGYQG------TYVN 291


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 684 MVASWVDRFPNTKVDDILEKLAKENSKYF 712
           ++ S++D F N     ++EK+ KEN K F
Sbjct: 149 VLKSFIDLF-NANARSVVEKMRKENGKEF 176


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 276 HYVKSFKEGDLSEHKEGSRFWIR 298
           H V+  + G L  H+  SR W R
Sbjct: 5   HVVRGIEHGGLYYHQRCSRDWFR 27


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 159 LTSLGLANKGVTTYFSSNCTEEDSNLVNDWMKTKLIEAYICRTFKTVADDGLPLY 213
           +T+LG A+   T   +  C EE++ +  D   T+ + A       TV  DG  LY
Sbjct: 355 MTALGTASSAATLPITFRCLEENNKI--DSRVTRFVVA----VGATVNMDGTALY 403


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.134    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,528
Number of Sequences: 429
Number of extensions: 8744
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 6
length of query: 721
length of database: 140,377
effective HSP length: 63
effective length of query: 658
effective length of database: 113,350
effective search space: 74584300
effective search space used: 74584300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)