GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004686-TA|BGIBMGA004686-PA|IPR006876|LMBR1-like
conserved region
         (693 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC110506-1|AAI10507.1|  695|Homo sapiens LMBR1 domain containing...   535   e-151
AL137370-1|CAB70714.1|  205|Homo sapiens hypothetical protein pr...   136   3e-31

>BC110506-1|AAI10507.1|  695|Homo sapiens LMBR1 domain containing 2
           protein.
          Length = 695

 Score =  535 bits (1320), Expect = e-151
 Identities = 273/696 (39%), Positives = 394/696 (56%), Gaps = 18/696 (2%)

Query: 8   VEIISAFVLAATLLYRYGDCYRNHILVTVSVLTAWYFSFVIMFLLPLDVTSTVYRQCLED 67
           +EI+  F LA  LL+RYGD  + H LV +  L AWY  F+I+F+LPLDV++T+Y +C   
Sbjct: 8   LEIVFVFFLALFLLHRYGDFKKQHRLVIIGTLLAWYLCFLIVFILPLDVSTTIYNRCKHA 67

Query: 68  NSTIAIAERAVINNVSSTTTP-PIV-PCQEPWSYVHKEVFTNLWRVVYWTSQCLTWLIMP 125
            +  +  E + I  + +T  P P   PC +PWSY+   +    WRVVYWTSQ LTW+++P
Sbjct: 68  AANSSPPENSNITGLYATANPVPSQHPCFKPWSYIPDGIMPIFWRVVYWTSQFLTWILLP 127

Query: 126 MMQSYSKAGDFTVKGKLKSALVDNAXXXXXXXXXXXXXXXXXXXKPGVSLDGXXXXXXXX 185
            MQSY+++G F++ GK+K+AL++NA                    P + L+         
Sbjct: 128 FMQSYARSGGFSITGKIKTALIENAIYYGTYLLIFGAFLIYVAVNPHLHLEWNQLQTIGI 187

Query: 186 XXXNTWGXXXXXXXXXXXXVEVPRNLWNNSKKNYTLTYSYFKIAKLSTDKCEAEETVDDI 245
              NTWG            VE+PR+ WN +K+ Y L  +YFK AKL T+K +AEE ++D 
Sbjct: 188 AAANTWGLFLLVLLLGYGLVEIPRSYWNGAKRGYLLMKTYFKAAKLMTEKADAEENLEDA 247

Query: 246 LDSLSAITAAVGPGHPLHRHVETIVQKLPVQLRDRMTXXXXXXXXXXX------XLKSLV 299
           ++ +  +  ++   HPL + V+TI++K P + +++M                    KSLV
Sbjct: 248 MEEVRKVNESIKYNHPLRKCVDTILKKCPTEYQEKMGRNMDDYEDFDEKHSIYPSEKSLV 307

Query: 300 NLHKKTIKALHVLQRTETQWGLSLERIFHLEDVASNQRLPDRRFQHFFPTPRPKLQRI-- 357
            LHK+ I ++   +RT+ QW + LE+ F+LEDVA N+     +F H F +P P+ + I  
Sbjct: 308 KLHKQVIYSVQRHRRTQVQWQILLEQAFYLEDVAKNETSATHQFVHTFQSPEPENRFIQY 367

Query: 358 LYPPILEWYWECFLKQYFLKGMAIITGIMSVAVVWSEMTFFCKKPVLSVFANVVIAAGET 417
            Y P  EWYWEC L+ +F K +A++  I SV VVWSE TFF   PVLS+FA  +  A +T
Sbjct: 368 FYNPTFEWYWECLLRPWFYKILAVVLSIFSVIVVWSECTFFSTTPVLSLFAVFIQLAEKT 427

Query: 418 YNYAAIVTISTVVIAYMFYCAYSTVLKIRLLNLYYLAPHHQTNEYSLIFSGMMVCRLTPA 477
           YNY  I     + I ++  C YSTV +IR+ N YYLA HHQT+ YSL+FSGM+ CRLTP 
Sbjct: 428 YNYIYIEIACFLSIFFLSICVYSTVFRIRVFNYYYLASHHQTDAYSLLFSGMLFCRLTPP 487

Query: 478 MCLNFLSLIHMDSHVIKERVMETSYTQIMGHMDVLGIIAEGFNIYFPMLVVLLCLATYLS 537
           +CLNFL L HMDS +  +    T+YT IMG M VL  IA+GF IY+PMLVV+LC+ATY S
Sbjct: 488 LCLNFLGLTHMDSSISHKNTQPTAYTSIMGSMKVLSFIADGFYIYYPMLVVILCIATYFS 547

Query: 538 LGSRVLTLCGFQQFVGDDELTTDLVDEGREIVXXXXXXXXXXXXSMSRRRDYSERFTKYR 597
           LG+R L L GFQQF+GDD++T+DLV+EG+E++              +RRR++ ER+   R
Sbjct: 548 LGTRCLNLLGFQQFMGDDDMTSDLVNEGKELIRKEKRKRQRQEEGENRRREWKERYGHNR 607

Query: 598 TNRDTNDGVIVHLGHIPARTGLLHDVDTEYYAGPDRSSAAVPDYERAEMPYNRSDLTLED 657
            +   N  +     H   +     DV+T   A     +    + +R E+  +   L    
Sbjct: 608 EDSTRNRNI-----HTDPKESNFSDVNTNRSAFKYTRANNRTERDRIELLQDAEPLDFNA 662

Query: 658 EIEHRFGDSALPTVRTEYDGRRDKMTMPPRGLFDDV 693
           E    F D  L +    Y      ++M    +F+DV
Sbjct: 663 E---TFTDDPLESESGRYQPGGRYLSMSRSDIFNDV 695


>AL137370-1|CAB70714.1|  205|Homo sapiens hypothetical protein
           protein.
          Length = 205

 Score =  136 bits (328), Expect = 3e-31
 Identities = 78/213 (36%), Positives = 112/213 (52%), Gaps = 8/213 (3%)

Query: 481 NFLSLIHMDSHVIKERVMETSYTQIMGHMDVLGIIAEGFNIYFPMLVVLLCLATYLSLGS 540
           NFL L HMDS +  +    T+YT IMG M VL  IA+GF IY+PMLVV+LC+ATY SLG+
Sbjct: 1   NFLGLTHMDSSISHKNTQPTAYTSIMGSMKVLSFIADGFYIYYPMLVVILCIATYFSLGT 60

Query: 541 RVLTLCGFQQFVGDDELTTDLVDEGREIVXXXXXXXXXXXXSMSRRRDYSERFTKYRTNR 600
           R L L GFQQF+GDD++T+DLV+EG+E++              +RRR++ ER+   R + 
Sbjct: 61  RCLNLLGFQQFMGDDDMTSDLVNEGKELIRKEKRKRQRQEEGENRRREWKERYGHNREDS 120

Query: 601 DTNDGVIVHLGHIPARTGLLHDVDTEYYAGPDRSSAAVPDYERAEMPYNRSDLTLEDEIE 660
             N  +     H   +     DV+T   A     +    + +R E+  +   L    E  
Sbjct: 121 TRNRNI-----HTDPKESNFSDVNTNRSAFKYTRANNRTERDRIELLQDAEPLDFNAE-- 173

Query: 661 HRFGDSALPTVRTEYDGRRDKMTMPPRGLFDDV 693
             F D  L +    Y      ++M    +F+DV
Sbjct: 174 -TFTDDPLESESGRYQPGGRYLSMSRSDIFNDV 205


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.324    0.137    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,472,972
Number of Sequences: 224733
Number of extensions: 3640121
Number of successful extensions: 10572
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10565
Number of HSP's gapped (non-prelim): 2
length of query: 693
length of database: 73,234,838
effective HSP length: 95
effective length of query: 598
effective length of database: 51,885,203
effective search space: 31027351394
effective search space used: 31027351394
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 69 (31.9 bits)