GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004685-TA|BGIBMGA004685-
PA|IPR005135|Endonuclease/exonuclease/phosphatase
         (188 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.4  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.4  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.4  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.4  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.4  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.4  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   9.8  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 138 IPSKETMLLGYPGKRNT 154
           I + E  L+G PGK+NT
Sbjct: 155 ITNGEWYLIGMPGKKNT 171


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 138 IPSKETMLLGYPGKRNT 154
           I + E  L+G PGK+NT
Sbjct: 155 ITNGEWYLIGMPGKKNT 171


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 138 IPSKETMLLGYPGKRNT 154
           I + E  L+G PGK+NT
Sbjct: 155 ITNGEWYLIGMPGKKNT 171


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 138 IPSKETMLLGYPGKRNT 154
           I + E  L+G PGK+NT
Sbjct: 155 ITNGEWYLIGMPGKKNT 171


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 138 IPSKETMLLGYPGKRNT 154
           I + E  L+G PGK+NT
Sbjct: 155 ITNGEWYLIGMPGKKNT 171


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 138 IPSKETMLLGYPGKRNT 154
           I + E  L+G PGK+NT
Sbjct: 155 ITNGEWYLIGMPGKKNT 171


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 138 IPSKETMLLGYPGKRNT 154
           I + E  L+G PGK+NT
Sbjct: 223 ITNGEWYLIGMPGKKNT 239


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 138 IPSKETMLLGYPGKRNT 154
           I + E  L+G PGK+NT
Sbjct: 223 ITNGEWYLIGMPGKKNT 239


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 138 IPSKETMLLGYPGKRNTFIEN 158
           I + E  LLG PGKRN    N
Sbjct: 192 ITNGEWDLLGVPGKRNEIYYN 212


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 165 HADESTCERRLGTSEQ 180
           H  +S C + +GT++Q
Sbjct: 27  HTVQSVCMKEIGTAQQ 42


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.131    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,500
Number of Sequences: 429
Number of extensions: 1797
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 188
length of database: 140,377
effective HSP length: 54
effective length of query: 134
effective length of database: 117,211
effective search space: 15706274
effective search space used: 15706274
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)