GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004682-TA|BGIBMGA004682-PA|IPR004142|Ndr
         (329 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   6.4  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   6.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.4  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   6.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   8.5  

>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 143 DAFRSRFSRWRGADISQSEEDFLIYH 168
           D  + +   W G +I+   + + IYH
Sbjct: 154 DKLKKKLEEWTGKNITTPWDYYYIYH 179


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 143 DAFRSRFSRWRGADISQSEEDFLIYH 168
           D  + +   W G +I+   + + IYH
Sbjct: 169 DKLKKKLEEWTGKNITTPWDYYYIYH 194


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 123 PRRLLGLVLVNCTASTSSVADA 144
           P  LLGL L+N    T+ + D+
Sbjct: 273 PEGLLGLKLINAENETAHIKDS 294


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 143 DAFRSRFSRWRGADISQSEEDFLIYH 168
           D  + +   W G +I+   + + IYH
Sbjct: 57  DKLKKKLEEWTGKNITTPWDYYYIYH 82


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 84  LQTLGEDLVTVLDFLHIRYAVGIGEG 109
           L + G  + T+L+F  + Y   +G G
Sbjct: 312 LMSFGYCIATLLEFAGVHYFTKVGSG 337


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,919
Number of Sequences: 429
Number of extensions: 4032
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 5
length of query: 329
length of database: 140,377
effective HSP length: 58
effective length of query: 271
effective length of database: 115,495
effective search space: 31299145
effective search space used: 31299145
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)