GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004681-TA|BGIBMGA004681-PA|IPR003008|Tubulin/FtsZ,
GTPase, IPR008280|Tubulin/FtsZ, C-terminal, IPR002452|Alpha tubulin,
IPR000217|Tubulin, IPR000158|Cell division protein FtsZ
         (436 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   1.7  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   5.0  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 3/34 (8%)

Query: 193 EAIYDI---CRRRLSIERPSYANLNRLISQVVSS 223
           EAIY +   C ++    RP++ANL + + +++ S
Sbjct: 865 EAIYQLMLDCWQKERTHRPTFANLTQTLDKLIRS 898


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 352 GDLAQVKRAASMLSNTTAIAEAWGKLDHKFD 382
           G + +   +   L+NT  +   W  LD+ FD
Sbjct: 20  GGVVRENSSGKNLTNTLNVIHKWKYLDYDFD 50


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,834
Number of Sequences: 429
Number of extensions: 4419
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 436
length of database: 140,377
effective HSP length: 60
effective length of query: 376
effective length of database: 114,637
effective search space: 43103512
effective search space used: 43103512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)