GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004676-TA|BGIBMGA004676-PA|undefined
         (96 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   0.87 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   2.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   2.7  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   3.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    20   6.1  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 0.87
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 40  FLSMSTVLHLLSVHLTKCPNQHHFRS 65
           +L  + +L  LS+ +T C    HFRS
Sbjct: 315 YLLFTMILVTLSIWITVCVLNVHFRS 340


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 2.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 20  RSTVPEDFRHLNDLIL 35
           +S VP D  H NDL +
Sbjct: 624 KSVVPSDESHWNDLAM 639


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 2.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 20  RSTVPEDFRHLNDLIL 35
           +S VP D  H NDL +
Sbjct: 662 KSVVPSDESHWNDLAM 677


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 20.6 bits (41), Expect = 3.5
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 25  EDFRHLNDLILAIIPFLSMSTVLHLLSVHLT 55
           E  +H+  L+ AI     ++ +LH+L+  +T
Sbjct: 108 ERHKHIVRLVTAIGDAYGVALLLHMLTTTIT 138


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 59  NQHHFRSALLIPTSVAALHSEMKTIGLILLEVKPVAQD 96
           +++ FRSAL    ++ A H     +G IL+    V +D
Sbjct: 350 SRYVFRSALEDYCNIVATHLVCGILGSILVPFFYVQED 387


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.137    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,733
Number of Sequences: 429
Number of extensions: 755
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 96
length of database: 140,377
effective HSP length: 49
effective length of query: 47
effective length of database: 119,356
effective search space:  5609732
effective search space used:  5609732
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.7 bits)
S2: 38 (19.4 bits)