GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004672-TA|BGIBMGA004672-PA|IPR000156|RanBP1
         (410 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      29   0.072
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   6.3  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   8.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.3  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 29.1 bits (62), Expect = 0.072
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 3/85 (3%)

Query: 115 PATNSPAAPS-FVFG-QNLSERVVIKKNGNNGEASATEHSSSNGTTELLFTNAAASVKEN 172
           P  N+ A P+ F  G +N      ++ NG + E S  E +      EL   N+  +   N
Sbjct: 200 PLNNNDATPTDFSMGVKNNHVSSKVEGNGVHEENSPLEDNIKCEPLELTGGNSG-NAAGN 258

Query: 173 NQESESSRAETSNRDALVAAAAEYE 197
           N++S  S A  S+R    A++ E+E
Sbjct: 259 NEDSSDSGAAASDRPPASASSNEHE 283



 Score = 25.0 bits (52), Expect = 1.2
 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 141 GNNGEASATEHSSSNGTTELLFTNAAASVKENNQESESSRAETSN 185
           GN+G A+     SS+           AS   N  E+ES    T N
Sbjct: 250 GNSGNAAGNNEDSSDSGAAAS-DRPPASASSNEHEAESEHTSTPN 293


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 381 DDNETKPLKRKEPVDDETSPKRQCPEI 407
           +++  K  K KE  DD  +P++  P++
Sbjct: 207 EEHGNKKKKNKEDEDDGATPRKAPPQL 233


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 161 LFTNA-AASVKENNQESESSRAETSNRDALVAAAA-EYERSHARPLPPTTNCTITGEEDE 218
           LF++A   +++       ++  E+S   A VAAAA  Y + H  P P  ++   +G    
Sbjct: 18  LFSSANPGTIQACTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSAS 77

Query: 219 TN 220
           T+
Sbjct: 78  TS 79


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 172 NNQESESSRAETSNRDAL 189
           NNQ S +SR  TSN  ++
Sbjct: 614 NNQTSSASRENTSNTTSM 631


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.127    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,856
Number of Sequences: 429
Number of extensions: 4378
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 5
length of query: 410
length of database: 140,377
effective HSP length: 59
effective length of query: 351
effective length of database: 115,066
effective search space: 40388166
effective search space used: 40388166
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 45 (22.2 bits)