GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004671-TA|BGIBMGA004671-PA|undefined
         (265 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.70 
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   2.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.6  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 17/82 (20%), Positives = 40/82 (48%), Gaps = 8/82 (9%)

Query: 163 RDHDTSLSQRRLVNTNRLRSRDKIF---DLHFTTHTSAAAALVAMSPTHARRGS--RIAR 217
           R+  +S+     +  +R+++ +K+    + HF  + S     +  S +H+  G   ++++
Sbjct: 660 REFRSSIKASDKLKDSRIKTTEKLSTDPNTHFQVNQSHG---IKRSGSHSWEGDSFKVSK 716

Query: 218 HSSPARSATFDNFSRKLTCTVT 239
           H   +R++T   F   +  TVT
Sbjct: 717 HEEVSRTSTAGQFPTNVATTVT 738


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 160 RSERDHDTSLSQRRLVNTNRLRSRDKI 186
           R +R +    S R+   T++ RSRD+I
Sbjct: 278 REQRSYKNENSYRKYRETSKERSRDRI 304


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 197 AAAALVAMSPTHARRGSRIARHSSPA 222
           +AAA+ + SP++   GS     SSP+
Sbjct: 72  SAAAITSTSPSYPGGGSSSPSPSSPS 97


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.132    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,959
Number of Sequences: 429
Number of extensions: 1706
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 265
length of database: 140,377
effective HSP length: 57
effective length of query: 208
effective length of database: 115,924
effective search space: 24112192
effective search space used: 24112192
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)