GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004670-TA|BGIBMGA004670-PA|IPR011701|Major facilitator
superfamily MFS_1, IPR007114|Major facilitator superfamily
         (120 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   3.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   6.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    20   8.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   8.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    20   8.9  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 20  LLAISFVGFVAGVLVSNSTAYLLPSAECD 48
           +  ISF  +++G L SN T + + +   D
Sbjct: 376 IFTISFQKYMSGTLNSNETNFRIQAGLVD 404


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 6/14 (42%), Positives = 10/14 (71%)

Query: 15   WFHIRLLAISFVGF 28
            W+H+R+ A +  GF
Sbjct: 1529 WYHLRVTAHNNAGF 1542


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)

Query: 69  LSTVIAGFLTDTFGRKTFVT 88
           L+T    FLTD    K FVT
Sbjct: 203 LTTCSFDFLTDDEDTKVFVT 222


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 8/11 (72%), Positives = 9/11 (81%)

Query: 57  GLLNAIPYSGM 67
           GLLNA+P S M
Sbjct: 524 GLLNALPPSSM 534


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)

Query: 69  LSTVIAGFLTDTFGRKTFVT 88
           L+T    FLTD    K FVT
Sbjct: 203 LTTCSFDFLTDDEDTKVFVT 222


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.139    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,186
Number of Sequences: 429
Number of extensions: 650
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 120
length of database: 140,377
effective HSP length: 51
effective length of query: 69
effective length of database: 118,498
effective search space:  8176362
effective search space used:  8176362
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.2 bits)
S2: 39 (19.8 bits)