GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004669-TA|BGIBMGA004669-PA|undefined
         (72 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF155114-1|AAD42880.1|  434|Homo sapiens NY-REN-57 antigen protein.    29   3.1  
AB209833-1|BAD93070.1|  554|Homo sapiens F-box only protein 9 is...    29   3.1  

>AF155114-1|AAD42880.1|  434|Homo sapiens NY-REN-57 antigen
          protein.
          Length = 434

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/23 (60%), Positives = 15/23 (65%)

Query: 50 STPRSPLERRAPSAACSTPISRE 72
          STPR P  RR PSA  S P+ RE
Sbjct: 28 STPRVPGSRRHPSAPRSGPLPRE 50


>AB209833-1|BAD93070.1|  554|Homo sapiens F-box only protein 9
          isoform 2 variant protein.
          Length = 554

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/23 (60%), Positives = 15/23 (65%)

Query: 50 STPRSPLERRAPSAACSTPISRE 72
          STPR P  RR PSA  S P+ RE
Sbjct: 32 STPRVPGSRRHPSAPRSGPLPRE 54


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.310    0.120    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,148,578
Number of Sequences: 224733
Number of extensions: 107307
Number of successful extensions: 252
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 250
Number of HSP's gapped (non-prelim): 2
length of query: 72
length of database: 73,234,838
effective HSP length: 51
effective length of query: 21
effective length of database: 61,773,455
effective search space: 1297242555
effective search space used: 1297242555
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)