GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004662-TA|BGIBMGA004662-PA|undefined
         (82 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   1.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   2.6  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          19   8.0  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 1.5
 Identities = 13/45 (28%), Positives = 19/45 (42%)

Query: 5   IQPQTLDNFNVEYNIIQECSVAKIFSDKFNIMYYSFKGGLALINL 49
           I P   DN  +  N  +   +AK F+  +N   Y  +G   L  L
Sbjct: 233 INPCIFDNATIVNNGPEAAKMAKAFTYTYNYSMYWGQGHAILKGL 277


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 2.6
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 7   PQTLDNFNVEYNIIQECSVAKIFSDKFNIMYYSFKGGLALINLFSQQVVDPVLIPENWFV 66
           P TL+  +V+ +  Q+CS+  I S         F     L  L +   + P  I + W  
Sbjct: 387 PSTLNIPSVKIDEDQKCSIESITSVNSTSSPKPFPRRATLAQLHNFTTMTPQEIAQ-WID 445

Query: 67  RHSGRLKWP 75
           R S R+ +P
Sbjct: 446 RRS-RIVFP 453



 Score = 19.0 bits (37), Expect = 8.0
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 33  FNIMYYSF 40
           FNI+Y+SF
Sbjct: 459 FNILYWSF 466


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 7   PQTLDNFNVEYNIIQECSVAKIF 29
           PQTL + NVE  +     + ++F
Sbjct: 115 PQTLTSENVEILLEHSSKLVELF 137


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.143    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,146
Number of Sequences: 429
Number of extensions: 849
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 82
length of database: 140,377
effective HSP length: 47
effective length of query: 35
effective length of database: 120,214
effective search space:  4207490
effective search space used:  4207490
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.2 bits)
S2: 37 (19.0 bits)