GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004658-TA|BGIBMGA004658-PA|IPR013721|STAG
         (1154 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   1.5  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   8.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 1104 ALAAYRSALLTDAPDERPPPVRRHYSRRGRHGQNEDEEGDENAESDGD 1151
            ++ + R+  ++ +P+  PPP R H         +++      AE D D
Sbjct: 1844 SVGSARNIPVSGSPEPPPPPPRNHDQNNSSFNDSKESNEISEAECDRD 1891


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 1096 LQWGEEWTALAAYRSALLTDAPD---ERPPPVRRHYSRR 1131
            + WGE+W  L +  S +  D  D   + P  +   YS+R
Sbjct: 287  VNWGEQWGFLPSKDSLVFVDNHDTQRDNPQILTYKYSKR 325


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 303,887
Number of Sequences: 429
Number of extensions: 11847
Number of successful extensions: 25
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 3
length of query: 1154
length of database: 140,377
effective HSP length: 65
effective length of query: 1089
effective length of database: 112,492
effective search space: 122503788
effective search space used: 122503788
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)