GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004657-TA|BGIBMGA004657-PA|IPR000426|Proteasome
alpha-subunit, IPR001353|20S proteasome, A and B subunits
         (246 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.0  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 163 YKAVAAGAKTGDGNAYLEKKLKKRSDL-STDDAIQLAIS-CLSQVLSVDFKSSEIEIGVV 220
           Y A+A G +  D N   +KK K    L      + + +  C   ++  D ++  +   VV
Sbjct: 290 YHAIAGGQQRPDENVVTDKKSKVNFALPELQHNLNILVDMCEQDIIQNDRRTRHLSDRVV 349

Query: 221 SKDNPKFRVLTETEIDRH 238
           + +  K + L++  ID+H
Sbjct: 350 ALEAEK-KNLSKV-IDQH 365



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 100 NWQYKYGSEIPVHIL 114
           NW Y++   IP HI+
Sbjct: 628 NWVYEWKELIPSHIM 642


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.132    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,539
Number of Sequences: 429
Number of extensions: 2476
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 246
length of database: 140,377
effective HSP length: 56
effective length of query: 190
effective length of database: 116,353
effective search space: 22107070
effective search space used: 22107070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)