GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004654-TA|BGIBMGA004654-PA|IPR000794|Beta-ketoacyl
synthase
         (141 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29344-1|AAA73576.1| 2509|Homo sapiens fatty acid synthase protein.    58   8e-09
BC063242-1|AAH63242.1| 2511|Homo sapiens fatty acid synthase pro...    58   8e-09
AY451392-1|AAS09886.1| 2511|Homo sapiens fatty acid synthase pro...    58   8e-09
AB209988-1|BAE06070.1| 2548|Homo sapiens FASN variant protein pr...    58   8e-09
U26644-1|AAC50259.1| 2504|Homo sapiens fas protein.                    56   4e-08
U52428-1|AAC50536.1|   41|Homo sapiens fatty acid synthase protein.    54   1e-07
AB076400-1|BAB86868.1| 1097|Homo sapiens fat3 protein.                 29   5.6  

>U29344-1|AAA73576.1| 2509|Homo sapiens fatty acid synthase protein.
          Length = 2509

 Score = 58.4 bits (135), Expect = 8e-09
 Identities = 23/42 (54%), Positives = 32/42 (76%)

Query: 69  DDIVLTGLSGKLPESNNIEEFAEQLFAGVDLVTADSRRWVPG 110
           +++V+ G+SGKLPES N++EF + L  GVD+VT D RRW  G
Sbjct: 2   EEVVIAGMSGKLPESENLQEFWDNLIGGVDMVTDDDRRWKAG 43


>BC063242-1|AAH63242.1| 2511|Homo sapiens fatty acid synthase
           protein.
          Length = 2511

 Score = 58.4 bits (135), Expect = 8e-09
 Identities = 23/42 (54%), Positives = 32/42 (76%)

Query: 69  DDIVLTGLSGKLPESNNIEEFAEQLFAGVDLVTADSRRWVPG 110
           +++V+ G+SGKLPES N++EF + L  GVD+VT D RRW  G
Sbjct: 2   EEVVIAGMSGKLPESENLQEFWDNLIGGVDMVTDDDRRWKAG 43


>AY451392-1|AAS09886.1| 2511|Homo sapiens fatty acid synthase
           protein.
          Length = 2511

 Score = 58.4 bits (135), Expect = 8e-09
 Identities = 23/42 (54%), Positives = 32/42 (76%)

Query: 69  DDIVLTGLSGKLPESNNIEEFAEQLFAGVDLVTADSRRWVPG 110
           +++V+ G+SGKLPES N++EF + L  GVD+VT D RRW  G
Sbjct: 2   EEVVIAGMSGKLPESENLQEFWDNLIGGVDMVTDDDRRWKAG 43


>AB209988-1|BAE06070.1| 2548|Homo sapiens FASN variant protein
           protein.
          Length = 2548

 Score = 58.4 bits (135), Expect = 8e-09
 Identities = 23/42 (54%), Positives = 32/42 (76%)

Query: 69  DDIVLTGLSGKLPESNNIEEFAEQLFAGVDLVTADSRRWVPG 110
           +++V+ G+SGKLPES N++EF + L  GVD+VT D RRW  G
Sbjct: 39  EEVVIAGMSGKLPESENLQEFWDNLIGGVDMVTDDDRRWKAG 80


>U26644-1|AAC50259.1| 2504|Homo sapiens fas protein.
          Length = 2504

 Score = 56.0 bits (129), Expect = 4e-08
 Identities = 22/42 (52%), Positives = 31/42 (73%)

Query: 69  DDIVLTGLSGKLPESNNIEEFAEQLFAGVDLVTADSRRWVPG 110
           +++V+ G+ GKLPES N++EF + L  GVD+VT D RRW  G
Sbjct: 2   EEVVIAGMFGKLPESENLQEFWDNLIGGVDMVTDDDRRWKAG 43


>U52428-1|AAC50536.1|   41|Homo sapiens fatty acid synthase protein.
          Length = 41

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 21/39 (53%), Positives = 30/39 (76%)

Query: 69  DDIVLTGLSGKLPESNNIEEFAEQLFAGVDLVTADSRRW 107
           +++V+ G+SGKLPES N++EF + L  GVD+VT D  RW
Sbjct: 2   EEVVIAGMSGKLPESENLQEFWDNLIGGVDMVTDDDLRW 40


>AB076400-1|BAB86868.1| 1097|Homo sapiens fat3 protein.
          Length = 1097

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 24  GPSVYRAISAARWKIFPLSYIPTTDCKSEGNMPSVVNGTNG 64
           G +VY+ +   +  + P++Y P     S  N+  +V+G  G
Sbjct: 726 GRNVYQEVGPPQVPVRPMAYTPCFQSDSRSNLDKIVDGLGG 766


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.319    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,152,701
Number of Sequences: 224733
Number of extensions: 873660
Number of successful extensions: 1162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1155
Number of HSP's gapped (non-prelim): 7
length of query: 141
length of database: 73,234,838
effective HSP length: 83
effective length of query: 58
effective length of database: 54,581,999
effective search space: 3165755942
effective search space used: 3165755942
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)