GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004654-TA|BGIBMGA004654-PA|IPR000794|Beta-ketoacyl
synthase
         (141 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   1.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   2.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   8.7  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 16/60 (26%), Positives = 23/60 (38%)

Query: 80  LPESNNIEEFAEQLFAGVDLVTADSRRWVPGESAEKSVKTCLIKRFPNIINDDYYAFPRN 139
           +PE  + E+ +     G  ++   +        A  SV   L K  PN I  D Y  P N
Sbjct: 128 MPEKMSDEKISTLYALGAKIIRTPTEASWHSPEAHISVAQKLQKEIPNSIILDQYTNPGN 187


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 8   HFQDKAHIYKFRTTTFGPSVYRAISA 33
           HF+  A   KF +  FG ++ R I A
Sbjct: 445 HFKQIARAVKFTSKLFGRALSRRIKA 470


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 11/23 (47%), Positives = 11/23 (47%)

Query: 45  PTTDCKSEGNMPSVVNGTNGAGV 67
           P  D   E     VV G NGAGV
Sbjct: 354 PKKDEDEEEEEEVVVVGRNGAGV 376


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,436
Number of Sequences: 429
Number of extensions: 1769
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 141
length of database: 140,377
effective HSP length: 52
effective length of query: 89
effective length of database: 118,069
effective search space: 10508141
effective search space used: 10508141
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)