GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004653-TA|BGIBMGA004653-PA|IPR001810|Cyclin-like F-box
         (179 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   1.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   4.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   4.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   5.2  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   6.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   6.9  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.1  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 103 HGLVKEDRIWARLYTRDFPDKNKCDAEDWRDAYKDVYAPKQ 143
           H  V  D +  ++  + FP     D E WR  ++  +A  Q
Sbjct: 119 HLQVFRDHLINQIPDKSFPGVGVIDFESWRPIFRQNWASLQ 159


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 106 VKEDRIWARLYTRDFPDKN 124
           +KED I  ++Y R F D N
Sbjct: 26  LKEDLIVYQVYPRSFKDSN 44


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 106 VKEDRIWARLYTRDFPDKN 124
           +KED I  ++Y R F D N
Sbjct: 26  LKEDLIVYQVYPRSFKDSN 44


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 7   GIRNGDTSTDLQQALSA 23
           G  NGDT TD++  L++
Sbjct: 132 GEHNGDTVTDVEAGLAS 148


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 7   GIRNGDTSTDLQQALSA 23
           G  NGDT TD++  L++
Sbjct: 127 GEHNGDTVTDVEAGLAS 143


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 146 RVQLDKNVLRESFQEFGGLPD 166
           R+  D+N+ + S+ EF  LP+
Sbjct: 290 RILRDENLSQNSYHEFQILPE 310


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 63  DKYDFPSGNLTGLPDDVFHQIILLLPVK 90
           DK   P+ N+T   +  F+   + +PVK
Sbjct: 206 DKRSHPAYNMTFAQNGPFNTTTIFVPVK 233


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 154 LRESFQEFGGLPDPLRVF 171
           LR++ + FGG P+ + +F
Sbjct: 233 LRDNAEAFGGDPELITIF 250


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 154 LRESFQEFGGLPDPLRVF 171
           LR++ + FGG P+ + +F
Sbjct: 233 LRDNAEAFGGDPELITIF 250


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.140    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,246
Number of Sequences: 429
Number of extensions: 2152
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 179
length of database: 140,377
effective HSP length: 54
effective length of query: 125
effective length of database: 117,211
effective search space: 14651375
effective search space used: 14651375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)