GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004652-TA|BGIBMGA004652-PA|undefined
         (55 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   0.51 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   1.6  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   1.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    19   4.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    19   4.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    19   4.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    19   6.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    19   6.3  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 0.51
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 8   LPVIQRLVKPRHNTKTLQETLGAFK 32
           L ++ RL+    N  TLQET  AFK
Sbjct: 376 LAIVDRLMDET-NQLTLQETADAFK 399


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.6 bits (41), Expect = 1.6
 Identities = 7/20 (35%), Positives = 15/20 (75%)

Query: 4   YDAQLPVIQRLVKPRHNTKT 23
           +++Q P++Q+L KP  ++ T
Sbjct: 308 HESQCPMLQKLEKPVLSSST 327


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 20.6 bits (41), Expect = 1.6
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 13  RLVKPRHNTKTLQETLGAFKLERKNSFWPHRANTAGLPPIS 53
           +L K   N   L+E  G F L+ + +   H     G+  IS
Sbjct: 285 KLPKLAANRAKLEEIAGKFNLQVRGTRGEHTEAEGGIYDIS 325


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.0 bits (37), Expect = 4.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 42  HRANTAGLPPISRL 55
           H  + A LPP+S L
Sbjct: 291 HAKSQASLPPVSYL 304


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 19.0 bits (37), Expect = 4.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)

Query: 16  KPRHNTKTLQETLGAF 31
           K R  TKTL   LG F
Sbjct: 613 KERKATKTLAIVLGVF 628


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.0 bits (37), Expect = 4.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 15  VKPRHNTKTLQETL 28
           +  RHNTK   +TL
Sbjct: 224 INTRHNTKNGMKTL 237


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 9/33 (27%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 6   AQLPVIQRLVKPRHNTKTLQETLGAFKLERKNS 38
           A +PV++ + +    +K+LQE + + KL+  ++
Sbjct: 851 AIVPVLESIQQKAKRSKSLQE-VSSDKLQESST 882


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 9/33 (27%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 6   AQLPVIQRLVKPRHNTKTLQETLGAFKLERKNS 38
           A +PV++ + +    +K+LQE + + KL+  ++
Sbjct: 889 AIVPVLESIQQKAKRSKSLQE-VSSDKLQESST 920


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.137    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,906
Number of Sequences: 429
Number of extensions: 524
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 55
length of database: 140,377
effective HSP length: 35
effective length of query: 20
effective length of database: 125,362
effective search space:  2507240
effective search space used:  2507240
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.2 bits)
S2: 35 (18.2 bits)