GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004651-TA|BGIBMGA004651-PA|undefined
         (68 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   0.75 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    19   5.3  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    19   5.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   5.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   5.3  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    18   9.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    18   9.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    18   9.3  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 0.75
 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 20  PISSCAQVGWSIVIAGPFLS-VHIGEYTHSSWPKVIDNKT 58
           P   C       ++  PF +   + EY H+ WP  I N T
Sbjct: 135 PSVECIVFNSGTILCVPFTTYTPVCEYDHTWWPYDILNCT 174


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 19.0 bits (37), Expect = 5.3
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 1   MAGPQLVGGSALSGRTHLPPISSC 24
           +AG  +V    L+G    PP+  C
Sbjct: 155 LAGLMIVAVWVLAGAITSPPLLGC 178


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 19.0 bits (37), Expect = 5.3
 Identities = 13/36 (36%), Positives = 15/36 (41%)

Query: 9   GSALSGRTHLPPISSCAQVGWSIVIAGPFLSVHIGE 44
           G ALS  T+    S  A  G   V   PF+    GE
Sbjct: 253 GMALSPVTNNLYYSPLASHGLYYVNTAPFMKSQFGE 288


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.0 bits (37), Expect = 5.3
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 31  IVIAGPFLSVHIG 43
           + +  P LSVH+G
Sbjct: 333 VEVTPPLLSVHLG 345


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.0 bits (37), Expect = 5.3
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 31  IVIAGPFLSVHIG 43
           + +  P LSVH+G
Sbjct: 333 VEVTPPLLSVHLG 345


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 18.2 bits (35), Expect = 9.3
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query: 53  VIDNKTQKSE 62
           +IDN  QK+E
Sbjct: 273 IIDNSAQKTE 282


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 18.2 bits (35), Expect = 9.3
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 30  SIVIAGPFLSVHIGEYTHSSWPKVIDNKTQKSEIDATV 67
           S+ +A      HI + + +S  K + +KT+      TV
Sbjct: 82  SLQVANLLRLFHIPQISPASTAKALSDKTRFDYFARTV 119


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 18.2 bits (35), Expect = 9.3
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 30  SIVIAGPFLSVHIGEYTHSSWPKVIDNKTQKSEIDATV 67
           S+ +A      HI + + +S  K + +KT+      TV
Sbjct: 172 SLQVANLLRLFHIPQISPASTAKALSDKTRFDYFARTV 209


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.131    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,961
Number of Sequences: 429
Number of extensions: 471
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 68
length of database: 140,377
effective HSP length: 45
effective length of query: 23
effective length of database: 121,072
effective search space:  2784656
effective search space used:  2784656
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.8 bits)
S2: 35 (18.2 bits)