GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004650-TA|BGIBMGA004650-PA|IPR003213|Cytochrome oxidase
c, subunit VIb
         (76 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   1.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   1.3  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    19   5.2  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    19   5.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    19   6.9  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    19   9.1  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 1.3
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 46  IFKRYYETICPNYWISHW 63
           +F R +  IC    I HW
Sbjct: 275 VFMRIFNLICMMLLIGHW 292


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 1.3
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 46  IFKRYYETICPNYWISHW 63
           +F R +  IC    I HW
Sbjct: 243 VFMRIFNLICMMLLIGHW 260


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 19.4 bits (38), Expect = 5.2
 Identities = 6/12 (50%), Positives = 8/12 (66%)

Query: 39  GEVDDCKIFKRY 50
           GE D+C I  +Y
Sbjct: 121 GETDECNIGNKY 132


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 19.4 bits (38), Expect = 5.2
 Identities = 6/12 (50%), Positives = 8/12 (66%)

Query: 39  GEVDDCKIFKRY 50
           GE D+C I  +Y
Sbjct: 121 GETDECNIGNKY 132


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
          ion channel subunit protein.
          Length = 469

 Score = 19.0 bits (37), Expect = 6.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 27 NYCDYFKCTRLLGEVD 42
          N C Y K TR  GE++
Sbjct: 19 NDCRYDKMTRPPGEIN 34


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 18.6 bits (36), Expect = 9.1
 Identities = 6/17 (35%), Positives = 9/17 (52%)

Query: 59  WISHWDEQREKGIFPGP 75
           WI  +   R+  I+P P
Sbjct: 397 WIPAFAIHRDSAIYPNP 413


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.146    0.528 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,814
Number of Sequences: 429
Number of extensions: 1209
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 76
length of database: 140,377
effective HSP length: 46
effective length of query: 30
effective length of database: 120,643
effective search space:  3619290
effective search space used:  3619290
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.8 bits)
S2: 36 (18.6 bits)